ZFP69.H12INVITRO.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZFP69.H12INVITRO.0.P.D
Gene (human)	ZFP69 (GeneCards)
Gene synonyms (human)	ZNF642
Gene (mouse)	Zfp69
Gene synonyms (mouse)	Znf642
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	19
Consensus	GWKRCWRGAWACAASvYMA
GC content	40.57%
Information content (bits; total / per base)	17.983 / 0.946
Data sources	ChIP-Seq
Aligned words	1006

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (2)	0.954	0.958	0.93	0.934	0.966	0.97	7.911	7.99	424.034	427.854

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF642-like {2.3.3.31} (TFClass)
TFClass ID	TFClass: 2.3.3.31.1
HGNC	HGNC:24708
MGI	MGI:107794
EntrezGene (human)	GeneID:339559 (SSTAR profile)
EntrezGene (mouse)	GeneID:381549 (SSTAR profile)
UniProt ID (human)	ZFP69_HUMAN
UniProt ID (mouse)	ZFP69_MOUSE
UniProt AC (human)	Q49AA0 (TFClass)
UniProt AC (mouse)	A2A761 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZFP69.H12INVITRO.0.P.D.pcm
PWM	ZFP69.H12INVITRO.0.P.D.pwm
PFM	ZFP69.H12INVITRO.0.P.D.pfm
Alignment	ZFP69.H12INVITRO.0.P.D.words.tsv
Threshold to P-value map	ZFP69.H12INVITRO.0.P.D.thr
Motif in other formats
JASPAR format	ZFP69.H12INVITRO.0.P.D_jaspar_format.txt
MEME format	ZFP69.H12INVITRO.0.P.D_meme_format.meme
Transfac format	ZFP69.H12INVITRO.0.P.D_transfac_format.txt
Homer format	ZFP69.H12INVITRO.0.P.D_homer_format_0.001.txt ZFP69.H12INVITRO.0.P.D_homer_format_0.0005.txt ZFP69.H12INVITRO.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	176.0	30.0	777.0	23.0
02	290.0	45.0	49.0	622.0
03	134.0	29.0	482.0	361.0
04	308.0	57.0	628.0	13.0
05	31.0	852.0	6.0	117.0
06	304.0	62.0	33.0	607.0
07	299.0	9.0	678.0	20.0
08	103.0	3.0	899.0	1.0
09	986.0	5.0	7.0	8.0
10	536.0	16.0	60.0	394.0
11	897.0	14.0	93.0	2.0
12	59.0	804.0	13.0	130.0
13	892.0	55.0	21.0	38.0
14	869.0	21.0	95.0	21.0
15	146.0	187.0	634.0	39.0
16	438.0	379.0	161.0	28.0
17	90.0	184.0	31.0	701.0
18	662.0	169.0	15.0	160.0
19	827.0	53.0	99.0	27.0

PFM

	A	C	G	T
01	0.175	0.03	0.772	0.023
02	0.288	0.045	0.049	0.618
03	0.133	0.029	0.479	0.359
04	0.306	0.057	0.624	0.013
05	0.031	0.847	0.006	0.116
06	0.302	0.062	0.033	0.603
07	0.297	0.009	0.674	0.02
08	0.102	0.003	0.894	0.001
09	0.98	0.005	0.007	0.008
10	0.533	0.016	0.06	0.392
11	0.892	0.014	0.092	0.002
12	0.059	0.799	0.013	0.129
13	0.887	0.055	0.021	0.038
14	0.864	0.021	0.094	0.021
15	0.145	0.186	0.63	0.039
16	0.435	0.377	0.16	0.028
17	0.089	0.183	0.031	0.697
18	0.658	0.168	0.015	0.159
19	0.822	0.053	0.098	0.027

PWM

	A	C	G	T
01	-0.354	-2.077	1.123	-2.326
02	0.142	-1.69	-1.608	0.901
03	-0.624	-2.109	0.647	0.359
04	0.201	-1.461	0.911	-2.845
05	-2.046	1.215	-3.489	-0.757
06	0.188	-1.38	-1.987	0.877
07	0.172	-3.161	0.987	-2.456
08	-0.883	-3.981	1.269	-4.531
09	1.361	-3.628	-3.368	-3.259
10	0.753	-2.659	-1.412	0.446
11	1.267	-2.779	-0.983	-4.218
12	-1.428	1.157	-2.845	-0.654
13	1.261	-1.496	-2.411	-1.852
14	1.235	-2.411	-0.962	-2.411
15	-0.539	-0.294	0.92	-1.827
16	0.552	0.408	-0.442	-2.142
17	-1.015	-0.31	-2.046	1.021
18	0.964	-0.394	-2.717	-0.448
19	1.186	-1.532	-0.922	-2.176

Standard thresholds

P-value	Threshold
0.001	1.92526
0.0005	3.16661
0.0001	5.78431