ZFP42.H12INVIVO.0.PM.A motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZFP42.H12INVIVO.0.PM.A
Gene (human)	ZFP42 (GeneCards)
Gene synonyms (human)	REX1, ZNF754
Gene (mouse)	Zfp42
Gene synonyms (mouse)	Rex-1, Rex1
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	A

Motif length	13
Consensus	RGSMGCCATYTTd
GC content	51.31%
Information content (bits; total / per base)	15.529 / 1.195
Data sources	ChIP-Seq + Methyl-HT-SELEX
Aligned words	588

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (5)	0.855	0.877	0.82	0.852	0.789	0.825	3.738	4.128	280.921	341.886

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
Methyl HT-SELEX, 1 experiments	median	0.974	0.968	0.812	0.819	0.676	0.699
Methyl HT-SELEX, 1 experiments	best	0.974	0.968	0.812	0.819	0.676	0.699

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	YY1-like {2.3.3.9} (TFClass)
TFClass ID	TFClass: 2.3.3.9.3
HGNC	HGNC:30949
MGI	MGI:99187
EntrezGene (human)	GeneID:132625 (SSTAR profile)
EntrezGene (mouse)	GeneID:22702 (SSTAR profile)
UniProt ID (human)	ZFP42_HUMAN
UniProt ID (mouse)	ZFP42_MOUSE
UniProt AC (human)	Q96MM3 (TFClass)
UniProt AC (mouse)	P22227 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	1

PCM	ZFP42.H12INVIVO.0.PM.A.pcm
PWM	ZFP42.H12INVIVO.0.PM.A.pwm
PFM	ZFP42.H12INVIVO.0.PM.A.pfm
Alignment	ZFP42.H12INVIVO.0.PM.A.words.tsv
Threshold to P-value map	ZFP42.H12INVIVO.0.PM.A.thr
Motif in other formats
JASPAR format	ZFP42.H12INVIVO.0.PM.A_jaspar_format.txt
MEME format	ZFP42.H12INVIVO.0.PM.A_meme_format.meme
Transfac format	ZFP42.H12INVIVO.0.PM.A_transfac_format.txt
Homer format	ZFP42.H12INVIVO.0.PM.A_homer_format_0.001.txt ZFP42.H12INVIVO.0.PM.A_homer_format_0.0005.txt ZFP42.H12INVIVO.0.PM.A_homer_format_0.0001.txt

PCM

	A	C	G	T
01	117.0	60.0	356.0	55.0
02	30.0	18.0	519.0	21.0
03	70.0	380.0	117.0	21.0
04	374.0	162.0	30.0	22.0
05	4.0	3.0	526.0	55.0
06	41.0	532.0	12.0	3.0
07	1.0	587.0	0.0	0.0
08	588.0	0.0	0.0	0.0
09	0.0	0.0	0.0	588.0
10	18.0	125.0	36.0	409.0
11	20.0	22.0	11.0	535.0
12	5.0	55.0	22.0	506.0
13	119.0	67.0	282.0	120.0

PFM

	A	C	G	T
01	0.199	0.102	0.605	0.094
02	0.051	0.031	0.883	0.036
03	0.119	0.646	0.199	0.036
04	0.636	0.276	0.051	0.037
05	0.007	0.005	0.895	0.094
06	0.07	0.905	0.02	0.005
07	0.002	0.998	0.0	0.0
08	1.0	0.0	0.0	0.0
09	0.0	0.0	0.0	1.0
10	0.031	0.213	0.061	0.696
11	0.034	0.037	0.019	0.91
12	0.009	0.094	0.037	0.861
13	0.202	0.114	0.48	0.204

PWM

	A	C	G	T
01	-0.226	-0.881	0.878	-0.965
02	-1.548	-2.026	1.254	-1.884
03	-0.73	0.943	-0.226	-1.884
04	0.927	0.096	-1.548	-1.84
05	-3.279	-3.476	1.267	-0.965
06	-1.25	1.278	-2.392	-3.476
07	-4.048	1.377	-4.535	-4.535
08	1.378	-4.535	-4.535	-4.535
09	-4.535	-4.535	-4.535	1.378
10	-2.026	-0.16	-1.374	1.016
11	-1.929	-1.84	-2.468	1.284
12	-3.115	-0.965	-1.84	1.228
13	-0.209	-0.773	0.646	-0.201

Standard thresholds

P-value	Threshold
0.001	2.63871
0.0005	3.88891
0.0001	6.473215