MotifZFP41.H12INVIVO.0.SM.D
Gene (human)ZFP41
(GeneCards)
Gene synonyms (human)
Gene (mouse)Zfp41
Gene synonyms (mouse)Zfp-41
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
D
Motif length18
ConsensusnnnGCTAACTCTCCGYvn
GC content54.72%
Information content (bits; total / per base)23.729 / 1.318
Data sourcesHT-SELEX + Methyl-HT-SELEX
Aligned words9998

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 2 experiments median 1.0 1.0 0.946 0.952 0.775 0.81
best 1.0 1.0 1.0 1.0 0.848 0.874
Methyl HT-SELEX, 1 experiments median 1.0 1.0 0.891 0.905 0.701 0.746
best 1.0 1.0 0.891 0.905 0.701 0.746
Non-Methyl HT-SELEX, 1 experiments median 1.0 1.0 1.0 1.0 0.848 0.874
best 1.0 1.0 1.0 1.0 0.848 0.874
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classC2H2 zinc finger factors {2.3} (TFClass)
TF familyMore than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamilyUnclassified {2.3.3.0} (TFClass)
TFClass IDTFClass: 2.3.3.0.17
HGNCHGNC:26786
MGIMGI:99186
EntrezGene (human)GeneID:286128
(SSTAR profile)
EntrezGene (mouse)GeneID:22701
(SSTAR profile)
UniProt ID (human)ZFP41_HUMAN
UniProt ID (mouse)ZFP41_MOUSE
UniProt AC (human)Q8N8Y5
(TFClass)
UniProt AC (mouse)Q02526
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 0 mouse
HT-SELEX 1
Methyl-HT-SELEX 1
PCM
ACGT
013210.02867.01787.02134.0
023747.02333.02158.01760.0
031885.02658.02362.03093.0
0420.03.09973.02.0
05250.09577.047.0124.0
064.021.016.09957.0
079976.016.03.03.0
089988.02.04.04.0
094.09985.03.06.0
107.03.06.09982.0
112.09984.04.08.0
123.08.04.09983.0
136.09983.06.03.0
1416.09973.01.08.0
152542.0162.07257.037.0
16267.07259.0173.02299.0
173862.251720.253073.251342.25
182677.253431.251622.252267.25
PFM
ACGT
010.3210.2870.1790.213
020.3750.2330.2160.176
030.1890.2660.2360.309
040.0020.00.9970.0
050.0250.9580.0050.012
060.00.0020.0020.996
070.9980.0020.00.0
080.9990.00.00.0
090.00.9990.00.001
100.0010.00.0010.998
110.00.9990.00.001
120.00.0010.00.998
130.0010.9980.0010.0
140.0020.9970.00.001
150.2540.0160.7260.004
160.0270.7260.0170.23
170.3860.1720.3070.134
180.2680.3430.1620.227
PWM
ACGT
010.250.137-0.335-0.158
020.405-0.069-0.147-0.35
03-0.2820.061-0.0570.213
04-4.72-6.1571.383-6.366
05-2.2941.343-3.927-2.986
06-5.984-4.676-4.9181.381
071.383-4.918-6.157-6.157
081.385-6.366-5.984-5.984
09-5.9841.384-6.157-5.708
10-5.594-6.157-5.7081.384
11-6.3661.384-5.984-5.492
12-6.157-5.492-5.9841.384
13-5.7081.384-5.708-6.157
14-4.9181.383-6.63-5.492
150.017-2.7231.065-4.153
16-2.2291.066-2.658-0.084
170.435-0.3730.206-0.621
180.0690.317-0.432-0.097
Standard thresholds
P-value Threshold
0.001 -9.28839
0.0005 -6.91669
0.0001 -2.00159