ZFP41.H12INVIVO.0.SM.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZFP41.H12INVIVO.0.SM.D
Gene (human)	ZFP41 (GeneCards)
Gene synonyms (human)
Gene (mouse)	Zfp41
Gene synonyms (mouse)	Zfp-41
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	18
Consensus	nnnGCTAACTCTCCGYvn
GC content	54.72%
Information content (bits; total / per base)	23.729 / 1.318
Data sources	HT-SELEX + Methyl-HT-SELEX
Aligned words	9998

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
Overall, 2 experiments	median	1.0	1.0	0.946	0.952	0.775	0.81
Overall, 2 experiments	best	1.0	1.0	1.0	1.0	0.848	0.874
Methyl HT-SELEX, 1 experiments	median	1.0	1.0	0.891	0.905	0.701	0.746
Methyl HT-SELEX, 1 experiments	best	1.0	1.0	0.891	0.905	0.701	0.746
Non-Methyl HT-SELEX, 1 experiments	median	1.0	1.0	1.0	1.0	0.848	0.874
Non-Methyl HT-SELEX, 1 experiments	best	1.0	1.0	1.0	1.0	0.848	0.874

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.17
HGNC	HGNC:26786
MGI	MGI:99186
EntrezGene (human)	GeneID:286128 (SSTAR profile)
EntrezGene (mouse)	GeneID:22701 (SSTAR profile)
UniProt ID (human)	ZFP41_HUMAN
UniProt ID (mouse)	ZFP41_MOUSE
UniProt AC (human)	Q8N8Y5 (TFClass)
UniProt AC (mouse)	Q02526 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	0 human, 0 mouse
HT-SELEX	1
Methyl-HT-SELEX	1

PCM	ZFP41.H12INVIVO.0.SM.D.pcm
PWM	ZFP41.H12INVIVO.0.SM.D.pwm
PFM	ZFP41.H12INVIVO.0.SM.D.pfm
Alignment	ZFP41.H12INVIVO.0.SM.D.words.tsv
Threshold to P-value map	ZFP41.H12INVIVO.0.SM.D.thr
Motif in other formats
JASPAR format	ZFP41.H12INVIVO.0.SM.D_jaspar_format.txt
MEME format	ZFP41.H12INVIVO.0.SM.D_meme_format.meme
Transfac format	ZFP41.H12INVIVO.0.SM.D_transfac_format.txt
Homer format	ZFP41.H12INVIVO.0.SM.D_homer_format_0.001.txt ZFP41.H12INVIVO.0.SM.D_homer_format_0.0005.txt ZFP41.H12INVIVO.0.SM.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	3210.0	2867.0	1787.0	2134.0
02	3747.0	2333.0	2158.0	1760.0
03	1885.0	2658.0	2362.0	3093.0
04	20.0	3.0	9973.0	2.0
05	250.0	9577.0	47.0	124.0
06	4.0	21.0	16.0	9957.0
07	9976.0	16.0	3.0	3.0
08	9988.0	2.0	4.0	4.0
09	4.0	9985.0	3.0	6.0
10	7.0	3.0	6.0	9982.0
11	2.0	9984.0	4.0	8.0
12	3.0	8.0	4.0	9983.0
13	6.0	9983.0	6.0	3.0
14	16.0	9973.0	1.0	8.0
15	2542.0	162.0	7257.0	37.0
16	267.0	7259.0	173.0	2299.0
17	3862.25	1720.25	3073.25	1342.25
18	2677.25	3431.25	1622.25	2267.25

PFM

	A	C	G	T
01	0.321	0.287	0.179	0.213
02	0.375	0.233	0.216	0.176
03	0.189	0.266	0.236	0.309
04	0.002	0.0	0.997	0.0
05	0.025	0.958	0.005	0.012
06	0.0	0.002	0.002	0.996
07	0.998	0.002	0.0	0.0
08	0.999	0.0	0.0	0.0
09	0.0	0.999	0.0	0.001
10	0.001	0.0	0.001	0.998
11	0.0	0.999	0.0	0.001
12	0.0	0.001	0.0	0.998
13	0.001	0.998	0.001	0.0
14	0.002	0.997	0.0	0.001
15	0.254	0.016	0.726	0.004
16	0.027	0.726	0.017	0.23
17	0.386	0.172	0.307	0.134
18	0.268	0.343	0.162	0.227

PWM

	A	C	G	T
01	0.25	0.137	-0.335	-0.158
02	0.405	-0.069	-0.147	-0.35
03	-0.282	0.061	-0.057	0.213
04	-4.72	-6.157	1.383	-6.366
05	-2.294	1.343	-3.927	-2.986
06	-5.984	-4.676	-4.918	1.381
07	1.383	-4.918	-6.157	-6.157
08	1.385	-6.366	-5.984	-5.984
09	-5.984	1.384	-6.157	-5.708
10	-5.594	-6.157	-5.708	1.384
11	-6.366	1.384	-5.984	-5.492
12	-6.157	-5.492	-5.984	1.384
13	-5.708	1.384	-5.708	-6.157
14	-4.918	1.383	-6.63	-5.492
15	0.017	-2.723	1.065	-4.153
16	-2.229	1.066	-2.658	-0.084
17	0.435	-0.373	0.206	-0.621
18	0.069	0.317	-0.432	-0.097

Standard thresholds

P-value	Threshold
0.001	-9.28839
0.0005	-6.91669
0.0001	-2.00159