ZFP37.H12INVIVO.0.P.C motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZFP37.H12INVIVO.0.P.C
Gene (human)	ZFP37 (GeneCards)
Gene synonyms (human)
Gene (mouse)	Zfp37
Gene synonyms (mouse)	Zfp-37
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	C

Motif length	21
Consensus	AGAAATGMWKRRvnMhdKRRv
GC content	39.12%
Information content (bits; total / per base)	14.342 / 0.683
Data sources	ChIP-Seq
Aligned words	162

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (4)	0.575	0.63	0.568	0.632	0.707	0.762	3.961	4.658	36.569	68.319

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF25-like {2.3.3.69} (TFClass)
TFClass ID	TFClass: 2.3.3.69.3
HGNC	HGNC:12863
MGI	MGI:99181
EntrezGene (human)	GeneID:7539 (SSTAR profile)
EntrezGene (mouse)	GeneID:22696 (SSTAR profile)
UniProt ID (human)	ZFP37_HUMAN
UniProt ID (mouse)	ZFP37_MOUSE
UniProt AC (human)	Q9Y6Q3 (TFClass)
UniProt AC (mouse)	P17141 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZFP37.H12INVIVO.0.P.C.pcm
PWM	ZFP37.H12INVIVO.0.P.C.pwm
PFM	ZFP37.H12INVIVO.0.P.C.pfm
Alignment	ZFP37.H12INVIVO.0.P.C.words.tsv
Threshold to P-value map	ZFP37.H12INVIVO.0.P.C.thr
Motif in other formats
JASPAR format	ZFP37.H12INVIVO.0.P.C_jaspar_format.txt
MEME format	ZFP37.H12INVIVO.0.P.C_meme_format.meme
Transfac format	ZFP37.H12INVIVO.0.P.C_transfac_format.txt
Homer format	ZFP37.H12INVIVO.0.P.C_homer_format_0.001.txt ZFP37.H12INVIVO.0.P.C_homer_format_0.0005.txt ZFP37.H12INVIVO.0.P.C_homer_format_0.0001.txt

PCM

	A	C	G	T
01	129.0	0.0	28.0	5.0
02	6.0	0.0	123.0	33.0
03	144.0	2.0	12.0	4.0
04	140.0	6.0	15.0	1.0
05	137.0	11.0	6.0	8.0
06	6.0	1.0	20.0	135.0
07	36.0	1.0	123.0	2.0
08	51.0	93.0	11.0	7.0
09	63.0	21.0	3.0	75.0
10	16.0	8.0	62.0	76.0
11	64.0	7.0	88.0	3.0
12	69.0	8.0	80.0	5.0
13	79.0	24.0	47.0	12.0
14	55.0	41.0	23.0	43.0
15	65.0	87.0	4.0	6.0
16	76.0	57.0	12.0	17.0
17	82.0	23.0	31.0	26.0
18	24.0	1.0	66.0	71.0
19	77.0	35.0	48.0	2.0
20	102.0	20.0	30.0	10.0
21	91.0	21.0	32.0	18.0

PFM

	A	C	G	T
01	0.796	0.0	0.173	0.031
02	0.037	0.0	0.759	0.204
03	0.889	0.012	0.074	0.025
04	0.864	0.037	0.093	0.006
05	0.846	0.068	0.037	0.049
06	0.037	0.006	0.123	0.833
07	0.222	0.006	0.759	0.012
08	0.315	0.574	0.068	0.043
09	0.389	0.13	0.019	0.463
10	0.099	0.049	0.383	0.469
11	0.395	0.043	0.543	0.019
12	0.426	0.049	0.494	0.031
13	0.488	0.148	0.29	0.074
14	0.34	0.253	0.142	0.265
15	0.401	0.537	0.025	0.037
16	0.469	0.352	0.074	0.105
17	0.506	0.142	0.191	0.16
18	0.148	0.006	0.407	0.438
19	0.475	0.216	0.296	0.012
20	0.63	0.123	0.185	0.062
21	0.562	0.13	0.198	0.111

PWM

	A	C	G	T
01	1.137	-3.492	-0.356	-1.896
02	-1.748	-3.492	1.09	-0.198
03	1.246	-2.547	-1.147	-2.07
04	1.218	-1.748	-0.943	-2.912
05	1.197	-1.225	-1.748	-1.505
06	-1.748	-2.912	-0.675	1.182
07	-0.114	-2.912	1.09	-2.547
08	0.224	0.814	-1.225	-1.619
09	0.431	-0.629	-2.28	0.602
10	-0.883	-1.505	0.415	0.615
11	0.446	-1.619	0.759	-2.28
12	0.52	-1.505	0.666	-1.896
13	0.653	-0.503	0.145	-1.147
14	0.298	0.012	-0.543	0.058
15	0.462	0.748	-2.07	-1.748
16	0.615	0.333	-1.147	-0.827
17	0.69	-0.543	-0.258	-0.426
18	-0.503	-2.912	0.477	0.548
19	0.628	-0.141	0.165	-2.547
20	0.905	-0.675	-0.29	-1.31
21	0.793	-0.629	-0.228	-0.774

Standard thresholds

P-value	Threshold
0.001	3.82681
0.0005	4.81181
0.0001	6.87981