ZFP3.H12INVIVO.0.P.C motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZFP3.H12INVIVO.0.P.C
Gene (human)	ZFP3 (GeneCards)
Gene synonyms (human)	ZNF752
Gene (mouse)	Zfp3
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	C

Motif length	23
Consensus	ACTCCTAYWCAYYCYYCAARRCC
GC content	47.33%
Information content (bits; total / per base)	26.664 / 1.159
Data sources	ChIP-Seq
Aligned words	976

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (7)	0.955	0.966	0.952	0.961	0.957	0.966	13.8	14.13	587.337	661.602

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.162
HGNC	HGNC:12861
MGI	MGI:99177
EntrezGene (human)	GeneID:124961 (SSTAR profile)
EntrezGene (mouse)	GeneID:193043 (SSTAR profile)
UniProt ID (human)	ZFP3_HUMAN
UniProt ID (mouse)	ZFP3_MOUSE
UniProt AC (human)	Q96NJ6 (TFClass)
UniProt AC (mouse)	Q8BLB0 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZFP3.H12INVIVO.0.P.C.pcm
PWM	ZFP3.H12INVIVO.0.P.C.pwm
PFM	ZFP3.H12INVIVO.0.P.C.pfm
Alignment	ZFP3.H12INVIVO.0.P.C.words.tsv
Threshold to P-value map	ZFP3.H12INVIVO.0.P.C.thr
Motif in other formats
JASPAR format	ZFP3.H12INVIVO.0.P.C_jaspar_format.txt
MEME format	ZFP3.H12INVIVO.0.P.C_meme_format.meme
Transfac format	ZFP3.H12INVIVO.0.P.C_transfac_format.txt
Homer format	ZFP3.H12INVIVO.0.P.C_homer_format_0.001.txt ZFP3.H12INVIVO.0.P.C_homer_format_0.0005.txt ZFP3.H12INVIVO.0.P.C_homer_format_0.0001.txt

PCM

	A	C	G	T
01	842.0	10.0	115.0	9.0
02	6.0	958.0	5.0	7.0
03	4.0	9.0	2.0	961.0
04	2.0	920.0	4.0	50.0
05	12.0	894.0	11.0	59.0
06	10.0	5.0	6.0	955.0
07	862.0	53.0	55.0	6.0
08	34.0	427.0	47.0	468.0
09	158.0	78.0	132.0	608.0
10	18.0	815.0	28.0	115.0
11	842.0	31.0	53.0	50.0
12	114.0	135.0	77.0	650.0
13	80.0	747.0	58.0	91.0
14	19.0	896.0	3.0	58.0
15	84.0	199.0	61.0	632.0
16	58.0	95.0	91.0	732.0
17	34.0	821.0	33.0	88.0
18	857.0	29.0	64.0	26.0
19	774.0	44.0	137.0	21.0
20	620.0	69.0	227.0	60.0
21	595.0	38.0	323.0	20.0
22	18.0	881.0	37.0	40.0
23	32.0	893.0	8.0	43.0

PFM

	A	C	G	T
01	0.863	0.01	0.118	0.009
02	0.006	0.982	0.005	0.007
03	0.004	0.009	0.002	0.985
04	0.002	0.943	0.004	0.051
05	0.012	0.916	0.011	0.06
06	0.01	0.005	0.006	0.978
07	0.883	0.054	0.056	0.006
08	0.035	0.438	0.048	0.48
09	0.162	0.08	0.135	0.623
10	0.018	0.835	0.029	0.118
11	0.863	0.032	0.054	0.051
12	0.117	0.138	0.079	0.666
13	0.082	0.765	0.059	0.093
14	0.019	0.918	0.003	0.059
15	0.086	0.204	0.063	0.648
16	0.059	0.097	0.093	0.75
17	0.035	0.841	0.034	0.09
18	0.878	0.03	0.066	0.027
19	0.793	0.045	0.14	0.022
20	0.635	0.071	0.233	0.061
21	0.61	0.039	0.331	0.02
22	0.018	0.903	0.038	0.041
23	0.033	0.915	0.008	0.044

PWM

	A	C	G	T
01	1.234	-3.043	-0.744	-3.132
02	-3.46	1.362	-3.599	-3.338
03	-3.76	-3.132	-4.19	1.366
04	-4.19	1.322	-3.76	-1.558
05	-2.885	1.293	-2.961	-1.398
06	-3.043	-3.599	-3.46	1.359
07	1.257	-1.502	-1.466	-3.46
08	-1.928	0.557	-1.618	0.648
09	-0.431	-1.126	-0.608	0.909
10	-2.523	1.201	-2.112	-0.744
11	1.234	-2.016	-1.502	-1.558
12	-0.753	-0.586	-1.138	0.975
13	-1.101	1.114	-1.415	-0.975
14	-2.473	1.296	-3.952	-1.415
15	-1.053	-0.202	-1.366	0.947
16	-1.415	-0.932	-0.975	1.094
17	-1.928	1.208	-1.957	-1.007
18	1.251	-2.079	-1.319	-2.182
19	1.15	-1.682	-0.572	-2.381
20	0.928	-1.245	-0.072	-1.382
21	0.887	-1.822	0.279	-2.426
22	-2.523	1.279	-1.848	-1.773
23	-1.986	1.292	-3.23	-1.704

Standard thresholds

P-value	Threshold
0.001	-2.53644
0.0005	-0.98879
0.0001	2.32561