ZFP28.H12INVIVO.0.P.B motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZFP28.H12INVIVO.0.P.B
Gene (human)	ZFP28 (GeneCards)
Gene synonyms (human)	KIAA1431
Gene (mouse)	Zfp28
Gene synonyms (mouse)	Mkr5, Zfp-28
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	B

Motif length	23
Consensus	TCYRTTTCYTYWKRdKTSAdYTY
GC content	34.72%
Information content (bits; total / per base)	21.062 / 0.916
Data sources	ChIP-Seq
Aligned words	1000

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	2 (8)	0.865	0.894	0.854	0.884	0.899	0.923	9.206	9.573	367.766	430.071

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.192
HGNC	HGNC:17801
MGI	MGI:99175
EntrezGene (human)	GeneID:140612 (SSTAR profile)
EntrezGene (mouse)	GeneID:22690 (SSTAR profile)
UniProt ID (human)	ZFP28_HUMAN
UniProt ID (mouse)	ZFP28_MOUSE
UniProt AC (human)	Q8NHY6 (TFClass)
UniProt AC (mouse)	P10078 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZFP28.H12INVIVO.0.P.B.pcm
PWM	ZFP28.H12INVIVO.0.P.B.pwm
PFM	ZFP28.H12INVIVO.0.P.B.pfm
Alignment	ZFP28.H12INVIVO.0.P.B.words.tsv
Threshold to P-value map	ZFP28.H12INVIVO.0.P.B.thr
Motif in other formats
JASPAR format	ZFP28.H12INVIVO.0.P.B_jaspar_format.txt
MEME format	ZFP28.H12INVIVO.0.P.B_meme_format.meme
Transfac format	ZFP28.H12INVIVO.0.P.B_transfac_format.txt
Homer format	ZFP28.H12INVIVO.0.P.B_homer_format_0.001.txt ZFP28.H12INVIVO.0.P.B_homer_format_0.0005.txt ZFP28.H12INVIVO.0.P.B_homer_format_0.0001.txt

PCM

	A	C	G	T
01	13.0	18.0	21.0	948.0
02	9.25	806.25	8.25	176.25
03	105.25	188.25	33.25	673.25
04	600.25	88.25	172.25	139.25
05	17.25	132.25	15.25	835.25
06	16.25	118.25	15.25	850.25
07	6.25	43.25	10.25	940.25
08	6.25	826.25	29.25	138.25
09	138.25	213.25	12.25	636.25
10	37.25	29.25	14.25	919.25
11	16.25	756.25	52.25	175.25
12	169.25	107.25	37.25	686.25
13	68.25	62.25	272.25	597.25
14	194.25	63.25	609.25	133.25
15	385.25	28.25	188.25	398.25
16	98.25	41.25	735.25	125.25
17	56.25	36.25	61.25	846.25
18	86.25	667.25	156.25	90.25
19	831.25	73.25	44.25	51.25
20	253.25	47.25	549.25	150.25
21	38.25	183.25	27.25	751.25
22	49.25	46.25	39.25	865.25
23	30.25	266.25	41.25	662.25

PFM

	A	C	G	T
01	0.013	0.018	0.021	0.948
02	0.009	0.806	0.008	0.176
03	0.105	0.188	0.033	0.673
04	0.6	0.088	0.172	0.139
05	0.017	0.132	0.015	0.835
06	0.016	0.118	0.015	0.85
07	0.006	0.043	0.01	0.94
08	0.006	0.826	0.029	0.138
09	0.138	0.213	0.012	0.636
10	0.037	0.029	0.014	0.919
11	0.016	0.756	0.052	0.175
12	0.169	0.107	0.037	0.686
13	0.068	0.062	0.272	0.597
14	0.194	0.063	0.609	0.133
15	0.385	0.028	0.188	0.398
16	0.098	0.041	0.735	0.125
17	0.056	0.036	0.061	0.846
18	0.086	0.667	0.156	0.09
19	0.831	0.073	0.044	0.051
20	0.253	0.047	0.549	0.15
21	0.038	0.183	0.027	0.751
22	0.049	0.046	0.039	0.865
23	0.03	0.266	0.041	0.662

PWM

	A	C	G	T
01	-2.839	-2.546	-2.405	1.328
02	-3.133	1.166	-3.228	-0.347
03	-0.856	-0.281	-1.974	0.986
04	0.872	-1.029	-0.369	-0.58
05	-2.585	-0.631	-2.696	1.201
06	-2.639	-0.741	-2.696	1.219
07	-3.452	-1.722	-3.045	1.32
08	-3.452	1.191	-2.095	-0.587
09	-0.587	-0.158	-2.891	0.93
10	-1.865	-2.095	-2.757	1.297
11	-2.639	1.102	-1.54	-0.352
12	-0.387	-0.837	-1.865	1.005
13	-1.28	-1.37	0.085	0.867
14	-0.25	-1.354	0.887	-0.623
15	0.43	-2.128	-0.281	0.463
16	-0.923	-1.768	1.074	-0.684
17	-1.468	-1.891	-1.386	1.215
18	-1.051	0.977	-0.466	-1.007
19	1.197	-1.211	-1.7	-1.558
20	0.013	-1.637	0.783	-0.505
21	-1.84	-0.308	-2.162	1.096
22	-1.597	-1.658	-1.815	1.237
23	-2.063	0.063	-1.768	0.97

Standard thresholds

P-value	Threshold
0.001	0.94026
0.0005	2.21746
0.0001	4.94431