MotifZFP28.H12INVITRO.0.P.D
Gene (human)ZFP28
(GeneCards)
Gene synonyms (human)KIAA1431
Gene (mouse)Zfp28
Gene synonyms (mouse)Mkr5, Zfp-28
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
D
Motif length23
ConsensusTCYRTTTCYTYWKRdKTSAdYTY
GC content34.72%
Information content (bits; total / per base)21.062 / 0.916
Data sourcesChIP-Seq
Aligned words1000

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 2 (8) 0.865 0.894 0.854 0.884 0.899 0.923 9.206 9.573 367.766 430.071
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classC2H2 zinc finger factors {2.3} (TFClass)
TF familyMore than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamilyUnclassified {2.3.3.0} (TFClass)
TFClass IDTFClass: 2.3.3.0.192
HGNCHGNC:17801
MGIMGI:99175
EntrezGene (human)GeneID:140612
(SSTAR profile)
EntrezGene (mouse)GeneID:22690
(SSTAR profile)
UniProt ID (human)ZFP28_HUMAN
UniProt ID (mouse)ZFP28_MOUSE
UniProt AC (human)Q8NHY6
(TFClass)
UniProt AC (mouse)P10078
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 2 human, 0 mouse
HT-SELEX 0
Methyl-HT-SELEX 0
PCM
ACGT
0113.018.021.0948.0
029.25806.258.25176.25
03105.25188.2533.25673.25
04600.2588.25172.25139.25
0517.25132.2515.25835.25
0616.25118.2515.25850.25
076.2543.2510.25940.25
086.25826.2529.25138.25
09138.25213.2512.25636.25
1037.2529.2514.25919.25
1116.25756.2552.25175.25
12169.25107.2537.25686.25
1368.2562.25272.25597.25
14194.2563.25609.25133.25
15385.2528.25188.25398.25
1698.2541.25735.25125.25
1756.2536.2561.25846.25
1886.25667.25156.2590.25
19831.2573.2544.2551.25
20253.2547.25549.25150.25
2138.25183.2527.25751.25
2249.2546.2539.25865.25
2330.25266.2541.25662.25
PFM
ACGT
010.0130.0180.0210.948
020.0090.8060.0080.176
030.1050.1880.0330.673
040.60.0880.1720.139
050.0170.1320.0150.835
060.0160.1180.0150.85
070.0060.0430.010.94
080.0060.8260.0290.138
090.1380.2130.0120.636
100.0370.0290.0140.919
110.0160.7560.0520.175
120.1690.1070.0370.686
130.0680.0620.2720.597
140.1940.0630.6090.133
150.3850.0280.1880.398
160.0980.0410.7350.125
170.0560.0360.0610.846
180.0860.6670.1560.09
190.8310.0730.0440.051
200.2530.0470.5490.15
210.0380.1830.0270.751
220.0490.0460.0390.865
230.030.2660.0410.662
PWM
ACGT
01-2.839-2.546-2.4051.328
02-3.1331.166-3.228-0.347
03-0.856-0.281-1.9740.986
040.872-1.029-0.369-0.58
05-2.585-0.631-2.6961.201
06-2.639-0.741-2.6961.219
07-3.452-1.722-3.0451.32
08-3.4521.191-2.095-0.587
09-0.587-0.158-2.8910.93
10-1.865-2.095-2.7571.297
11-2.6391.102-1.54-0.352
12-0.387-0.837-1.8651.005
13-1.28-1.370.0850.867
14-0.25-1.3540.887-0.623
150.43-2.128-0.2810.463
16-0.923-1.7681.074-0.684
17-1.468-1.891-1.3861.215
18-1.0510.977-0.466-1.007
191.197-1.211-1.7-1.558
200.013-1.6370.783-0.505
21-1.84-0.308-2.1621.096
22-1.597-1.658-1.8151.237
23-2.0630.063-1.7680.97
Standard thresholds
P-value Threshold
0.001 0.94026
0.0005 2.21746
0.0001 4.94431