ZFP14.H12INVIVO.0.P.C motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZFP14.H12INVIVO.0.P.C
Gene (human)	ZFP14 (GeneCards)
Gene synonyms (human)	KIAA1559, ZNF531
Gene (mouse)	Zfp14
Gene synonyms (mouse)	Kiaa1559, Krox-9, Zfp-14
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	C

Motif length	18
Consensus	RMvYTCMdKdbSCTCChh
GC content	59.49%
Information content (bits; total / per base)	16.362 / 0.909
Data sources	ChIP-Seq
Aligned words	614

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (4)	0.962	0.967	0.933	0.934	0.971	0.978	6.405	6.436	264.817	305.745

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZFP30-like {2.3.3.63} (TFClass)
TFClass ID	TFClass: 2.3.3.63.3
HGNC	HGNC:29312
MGI	MGI:99160
EntrezGene (human)	GeneID:57677 (SSTAR profile)
EntrezGene (mouse)	GeneID:243906 (SSTAR profile)
UniProt ID (human)	ZFP14_HUMAN
UniProt ID (mouse)	ZFP14_MOUSE
UniProt AC (human)	Q9HCL3 (TFClass)
UniProt AC (mouse)	P10755 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZFP14.H12INVIVO.0.P.C.pcm
PWM	ZFP14.H12INVIVO.0.P.C.pwm
PFM	ZFP14.H12INVIVO.0.P.C.pfm
Alignment	ZFP14.H12INVIVO.0.P.C.words.tsv
Threshold to P-value map	ZFP14.H12INVIVO.0.P.C.thr
Motif in other formats
JASPAR format	ZFP14.H12INVIVO.0.P.C_jaspar_format.txt
MEME format	ZFP14.H12INVIVO.0.P.C_meme_format.meme
Transfac format	ZFP14.H12INVIVO.0.P.C_transfac_format.txt
Homer format	ZFP14.H12INVIVO.0.P.C_homer_format_0.001.txt ZFP14.H12INVIVO.0.P.C_homer_format_0.0005.txt ZFP14.H12INVIVO.0.P.C_homer_format_0.0001.txt

PCM

	A	C	G	T
01	81.0	39.0	435.0	59.0
02	143.0	412.0	33.0	26.0
03	177.0	109.0	236.0	92.0
04	7.0	148.0	35.0	424.0
05	2.0	4.0	4.0	604.0
06	0.0	602.0	0.0	12.0
07	72.0	473.0	5.0	64.0
08	286.0	93.0	104.0	131.0
09	49.0	51.0	443.0	71.0
10	131.0	11.0	192.0	280.0
11	32.0	92.0	282.0	208.0
12	2.0	359.0	193.0	60.0
13	3.0	607.0	0.0	4.0
14	0.0	4.0	0.0	610.0
15	1.0	559.0	0.0	54.0
16	12.0	538.0	2.0	62.0
17	285.0	149.0	73.0	107.0
18	95.0	227.0	61.0	231.0

PFM

	A	C	G	T
01	0.132	0.064	0.708	0.096
02	0.233	0.671	0.054	0.042
03	0.288	0.178	0.384	0.15
04	0.011	0.241	0.057	0.691
05	0.003	0.007	0.007	0.984
06	0.0	0.98	0.0	0.02
07	0.117	0.77	0.008	0.104
08	0.466	0.151	0.169	0.213
09	0.08	0.083	0.721	0.116
10	0.213	0.018	0.313	0.456
11	0.052	0.15	0.459	0.339
12	0.003	0.585	0.314	0.098
13	0.005	0.989	0.0	0.007
14	0.0	0.007	0.0	0.993
15	0.002	0.91	0.0	0.088
16	0.02	0.876	0.003	0.101
17	0.464	0.243	0.119	0.174
18	0.155	0.37	0.099	0.376

PWM

	A	C	G	T
01	-0.63	-1.34	1.035	-0.94
02	-0.07	0.981	-1.5	-1.726
03	0.141	-0.338	0.427	-0.505
04	-2.892	-0.036	-1.444	1.009
05	-3.762	-3.32	-3.32	1.362
06	-4.571	1.359	-4.571	-2.434
07	-0.745	1.118	-3.156	-0.86
08	0.617	-0.494	-0.384	-0.157
09	-1.12	-1.081	1.053	-0.759
10	-0.157	-2.51	0.222	0.596
11	-1.529	-0.505	0.603	0.301
12	-3.762	0.844	0.227	-0.923
13	-3.517	1.367	-4.571	-3.32
14	-4.571	-3.32	-4.571	1.372
15	-4.087	1.285	-4.571	-1.026
16	-2.434	1.247	-3.762	-0.891
17	0.614	-0.029	-0.732	-0.356
18	-0.473	0.388	-0.907	0.405

Standard thresholds

P-value	Threshold
0.001	2.22781
0.0005	3.52181
0.0001	6.21571