| Motif | ZFP1.H12RSNP.0.PSM.D |
| Gene (human) | ZFP1 (GeneCards) |
| Gene synonyms (human) | ZNF475 |
| Gene (mouse) | Zfp1 |
| Gene synonyms (mouse) | Fnp-1, Zfp-1 |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | D |
| Motif | ZFP1.H12RSNP.0.PSM.D |
| Gene (human) | ZFP1 (GeneCards) |
| Gene synonyms (human) | ZNF475 |
| Gene (mouse) | Zfp1 |
| Gene synonyms (mouse) | Fnp-1, Zfp-1 |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | D |
| Motif length | 23 |
| Consensus | YWYYRYhYCCWGShMhvbYvdSh |
| GC content | 47.4% |
| Information content (bits; total / per base) | 12.933 / 0.562 |
| Data sources | ChIP-Seq + HT-SELEX + Methyl-HT-SELEX |
| Aligned words | 1000 |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Human | 2 (9) | 0.665 | 0.853 | 0.633 | 0.872 | 0.693 | 0.857 | 5.11 | 10.965 | 37.086 | 95.523 |
| HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| Overall, 2 experiments | median | 0.991 | 0.989 | 0.921 | 0.922 | 0.805 | 0.821 |
| best | 0.999 | 0.999 | 0.994 | 0.992 | 0.925 | 0.925 | |
| Methyl HT-SELEX, 1 experiments | median | 0.999 | 0.999 | 0.994 | 0.992 | 0.925 | 0.925 |
| best | 0.999 | 0.999 | 0.994 | 0.992 | 0.925 | 0.925 | |
| Non-Methyl HT-SELEX, 1 experiments | median | 0.984 | 0.98 | 0.848 | 0.851 | 0.684 | 0.717 |
| best | 0.984 | 0.98 | 0.848 | 0.851 | 0.684 | 0.717 | |
| TF superclass | Zinc-coordinating DNA-binding domains {2} (TFClass) |
| TF class | C2H2 zinc finger factors {2.3} (TFClass) |
| TF family | More than 3 adjacent zinc fingers {2.3.3} (TFClass) |
| TF subfamily | Unclassified {2.3.3.0} (TFClass) |
| TFClass ID | TFClass: 2.3.3.0.72 |
| HGNC | HGNC:23328 |
| MGI | MGI:99154 |
| EntrezGene (human) | GeneID:162239 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:22640 (SSTAR profile) |
| UniProt ID (human) | ZFP1_HUMAN |
| UniProt ID (mouse) | ZFP1_MOUSE |
| UniProt AC (human) | Q6P2D0 (TFClass) |
| UniProt AC (mouse) | P08042 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 2 human, 0 mouse |
| HT-SELEX | 1 |
| Methyl-HT-SELEX | 1 |
| PCM | ZFP1.H12RSNP.0.PSM.D.pcm |
| PWM | ZFP1.H12RSNP.0.PSM.D.pwm |
| PFM | ZFP1.H12RSNP.0.PSM.D.pfm |
| Alignment | ZFP1.H12RSNP.0.PSM.D.words.tsv |
| Threshold to P-value map | ZFP1.H12RSNP.0.PSM.D.thr |
| Motif in other formats | |
| JASPAR format | ZFP1.H12RSNP.0.PSM.D_jaspar_format.txt |
| MEME format | ZFP1.H12RSNP.0.PSM.D_meme_format.meme |
| Transfac format | ZFP1.H12RSNP.0.PSM.D_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 42.0 | 180.0 | 56.0 | 722.0 |
| 02 | 115.0 | 102.0 | 71.0 | 712.0 |
| 03 | 47.0 | 345.0 | 104.0 | 504.0 |
| 04 | 93.0 | 302.0 | 66.0 | 539.0 |
| 05 | 623.0 | 96.0 | 183.0 | 98.0 |
| 06 | 72.0 | 176.0 | 93.0 | 659.0 |
| 07 | 592.0 | 141.0 | 100.0 | 167.0 |
| 08 | 90.0 | 704.0 | 88.0 | 118.0 |
| 09 | 41.0 | 883.0 | 23.0 | 53.0 |
| 10 | 40.0 | 853.0 | 14.0 | 93.0 |
| 11 | 729.0 | 36.0 | 53.0 | 182.0 |
| 12 | 67.0 | 70.0 | 834.0 | 29.0 |
| 13 | 69.0 | 759.0 | 96.0 | 76.0 |
| 14 | 256.0 | 349.0 | 75.0 | 320.0 |
| 15 | 504.0 | 335.0 | 136.0 | 25.0 |
| 16 | 580.0 | 184.0 | 66.0 | 170.0 |
| 17 | 546.0 | 130.0 | 195.0 | 129.0 |
| 18 | 148.0 | 523.0 | 162.0 | 167.0 |
| 19 | 104.0 | 146.0 | 94.0 | 656.0 |
| 20 | 473.0 | 150.0 | 265.0 | 112.0 |
| 21 | 212.0 | 180.0 | 186.0 | 422.0 |
| 22 | 80.0 | 681.0 | 143.0 | 96.0 |
| 23 | 323.0 | 413.0 | 61.0 | 203.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.042 | 0.18 | 0.056 | 0.722 |
| 02 | 0.115 | 0.102 | 0.071 | 0.712 |
| 03 | 0.047 | 0.345 | 0.104 | 0.504 |
| 04 | 0.093 | 0.302 | 0.066 | 0.539 |
| 05 | 0.623 | 0.096 | 0.183 | 0.098 |
| 06 | 0.072 | 0.176 | 0.093 | 0.659 |
| 07 | 0.592 | 0.141 | 0.1 | 0.167 |
| 08 | 0.09 | 0.704 | 0.088 | 0.118 |
| 09 | 0.041 | 0.883 | 0.023 | 0.053 |
| 10 | 0.04 | 0.853 | 0.014 | 0.093 |
| 11 | 0.729 | 0.036 | 0.053 | 0.182 |
| 12 | 0.067 | 0.07 | 0.834 | 0.029 |
| 13 | 0.069 | 0.759 | 0.096 | 0.076 |
| 14 | 0.256 | 0.349 | 0.075 | 0.32 |
| 15 | 0.504 | 0.335 | 0.136 | 0.025 |
| 16 | 0.58 | 0.184 | 0.066 | 0.17 |
| 17 | 0.546 | 0.13 | 0.195 | 0.129 |
| 18 | 0.148 | 0.523 | 0.162 | 0.167 |
| 19 | 0.104 | 0.146 | 0.094 | 0.656 |
| 20 | 0.473 | 0.15 | 0.265 | 0.112 |
| 21 | 0.212 | 0.18 | 0.186 | 0.422 |
| 22 | 0.08 | 0.681 | 0.143 | 0.096 |
| 23 | 0.323 | 0.413 | 0.061 | 0.203 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -1.75 | -0.326 | -1.473 | 1.056 |
| 02 | -0.769 | -0.887 | -1.242 | 1.042 |
| 03 | -1.642 | 0.32 | -0.867 | 0.698 |
| 04 | -0.977 | 0.188 | -1.313 | 0.765 |
| 05 | 0.909 | -0.946 | -0.309 | -0.926 |
| 06 | -1.228 | -0.348 | -0.977 | 0.965 |
| 07 | 0.858 | -0.567 | -0.906 | -0.4 |
| 08 | -1.01 | 1.031 | -1.032 | -0.743 |
| 09 | -1.774 | 1.257 | -2.32 | -1.526 |
| 10 | -1.797 | 1.222 | -2.773 | -0.977 |
| 11 | 1.066 | -1.898 | -1.526 | -0.315 |
| 12 | -1.298 | -1.255 | 1.2 | -2.103 |
| 13 | -1.27 | 1.106 | -0.946 | -1.175 |
| 14 | 0.024 | 0.332 | -1.188 | 0.245 |
| 15 | 0.698 | 0.291 | -0.603 | -2.243 |
| 16 | 0.838 | -0.304 | -1.313 | -0.382 |
| 17 | 0.777 | -0.648 | -0.247 | -0.655 |
| 18 | -0.52 | 0.735 | -0.43 | -0.4 |
| 19 | -0.867 | -0.533 | -0.967 | 0.96 |
| 20 | 0.634 | -0.506 | 0.058 | -0.795 |
| 21 | -0.164 | -0.326 | -0.293 | 0.521 |
| 22 | -1.125 | 0.998 | -0.553 | -0.946 |
| 23 | 0.255 | 0.499 | -1.39 | -0.207 |
| P-value | Threshold |
|---|---|
| 0.001 | 4.07761 |
| 0.0005 | 4.97071 |
| 0.0001 | 6.87691 |