MotifZFP1.H12INVIVO.0.PSM.A
Gene (human)ZFP1
(GeneCards)
Gene synonyms (human)ZNF475
Gene (mouse)Zfp1
Gene synonyms (mouse)Fnp-1, Zfp-1
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
A
Motif length23
ConsensusYWYYRYhYCCWGShMhvbYvdSh
GC content47.4%
Information content (bits; total / per base)12.933 / 0.562
Data sourcesChIP-Seq + HT-SELEX + Methyl-HT-SELEX
Aligned words1000

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 2 (9) 0.665 0.853 0.633 0.872 0.693 0.857 5.11 10.965 37.086 95.523

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 2 experiments median 0.991 0.989 0.921 0.922 0.805 0.821
best 0.999 0.999 0.994 0.992 0.925 0.925
Methyl HT-SELEX, 1 experiments median 0.999 0.999 0.994 0.992 0.925 0.925
best 0.999 0.999 0.994 0.992 0.925 0.925
Non-Methyl HT-SELEX, 1 experiments median 0.984 0.98 0.848 0.851 0.684 0.717
best 0.984 0.98 0.848 0.851 0.684 0.717
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classC2H2 zinc finger factors {2.3} (TFClass)
TF familyMore than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamilyUnclassified {2.3.3.0} (TFClass)
TFClass IDTFClass: 2.3.3.0.72
HGNCHGNC:23328
MGIMGI:99154
EntrezGene (human)GeneID:162239
(SSTAR profile)
EntrezGene (mouse)GeneID:22640
(SSTAR profile)
UniProt ID (human)ZFP1_HUMAN
UniProt ID (mouse)ZFP1_MOUSE
UniProt AC (human)Q6P2D0
(TFClass)
UniProt AC (mouse)P08042
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 2 human, 0 mouse
HT-SELEX 1
Methyl-HT-SELEX 1
PCM
ACGT
0142.0180.056.0722.0
02115.0102.071.0712.0
0347.0345.0104.0504.0
0493.0302.066.0539.0
05623.096.0183.098.0
0672.0176.093.0659.0
07592.0141.0100.0167.0
0890.0704.088.0118.0
0941.0883.023.053.0
1040.0853.014.093.0
11729.036.053.0182.0
1267.070.0834.029.0
1369.0759.096.076.0
14256.0349.075.0320.0
15504.0335.0136.025.0
16580.0184.066.0170.0
17546.0130.0195.0129.0
18148.0523.0162.0167.0
19104.0146.094.0656.0
20473.0150.0265.0112.0
21212.0180.0186.0422.0
2280.0681.0143.096.0
23323.0413.061.0203.0
PFM
ACGT
010.0420.180.0560.722
020.1150.1020.0710.712
030.0470.3450.1040.504
040.0930.3020.0660.539
050.6230.0960.1830.098
060.0720.1760.0930.659
070.5920.1410.10.167
080.090.7040.0880.118
090.0410.8830.0230.053
100.040.8530.0140.093
110.7290.0360.0530.182
120.0670.070.8340.029
130.0690.7590.0960.076
140.2560.3490.0750.32
150.5040.3350.1360.025
160.580.1840.0660.17
170.5460.130.1950.129
180.1480.5230.1620.167
190.1040.1460.0940.656
200.4730.150.2650.112
210.2120.180.1860.422
220.080.6810.1430.096
230.3230.4130.0610.203
PWM
ACGT
01-1.75-0.326-1.4731.056
02-0.769-0.887-1.2421.042
03-1.6420.32-0.8670.698
04-0.9770.188-1.3130.765
050.909-0.946-0.309-0.926
06-1.228-0.348-0.9770.965
070.858-0.567-0.906-0.4
08-1.011.031-1.032-0.743
09-1.7741.257-2.32-1.526
10-1.7971.222-2.773-0.977
111.066-1.898-1.526-0.315
12-1.298-1.2551.2-2.103
13-1.271.106-0.946-1.175
140.0240.332-1.1880.245
150.6980.291-0.603-2.243
160.838-0.304-1.313-0.382
170.777-0.648-0.247-0.655
18-0.520.735-0.43-0.4
19-0.867-0.533-0.9670.96
200.634-0.5060.058-0.795
21-0.164-0.326-0.2930.521
22-1.1250.998-0.553-0.946
230.2550.499-1.39-0.207
Standard thresholds
P-value Threshold
0.001 4.07761
0.0005 4.97071
0.0001 6.87691