MotifZFP1.H12INVITRO.0.PSM.A
Gene (human)ZFP1
(GeneCards)
Gene synonyms (human)ZNF475
Gene (mouse)Zfp1
Gene synonyms (mouse)Fnp-1, Zfp-1
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
A
Motif length19
ConsensusnYdYbATACCCARChvWdn
GC content43.65%
Information content (bits; total / per base)15.77 / 0.83
Data sourcesChIP-Seq + HT-SELEX + Methyl-HT-SELEX
Aligned words9951

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 2 (9) 0.61 0.854 0.593 0.869 0.638 0.867 3.881 7.629 41.469 98.824

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 2 experiments median 0.996 0.995 0.928 0.931 0.833 0.849
best 1.0 1.0 0.999 0.999 0.973 0.972
Methyl HT-SELEX, 1 experiments median 1.0 1.0 0.999 0.999 0.973 0.972
best 1.0 1.0 0.999 0.999 0.973 0.972
Non-Methyl HT-SELEX, 1 experiments median 0.992 0.99 0.856 0.863 0.693 0.725
best 0.992 0.99 0.856 0.863 0.693 0.725
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classC2H2 zinc finger factors {2.3} (TFClass)
TF familyMore than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamilyUnclassified {2.3.3.0} (TFClass)
TFClass IDTFClass: 2.3.3.0.72
HGNCHGNC:23328
MGIMGI:99154
EntrezGene (human)GeneID:162239
(SSTAR profile)
EntrezGene (mouse)GeneID:22640
(SSTAR profile)
UniProt ID (human)ZFP1_HUMAN
UniProt ID (mouse)ZFP1_MOUSE
UniProt AC (human)Q6P2D0
(TFClass)
UniProt AC (mouse)P08042
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 2 human, 0 mouse
HT-SELEX 1
Methyl-HT-SELEX 1
PCM
ACGT
012034.03163.01983.02771.0
02948.51409.5581.57011.5
032435.0941.01964.04611.0
04650.02316.0643.06342.0
05711.01429.02481.05330.0
069264.0172.0378.0137.0
07125.0190.083.09553.0
089542.0159.081.0169.0
09198.09495.0156.0102.0
1051.09760.062.078.0
1195.08520.079.01257.0
128477.0125.0203.01146.0
131232.0456.07537.0726.0
14828.08137.0321.0665.0
152433.01797.0927.04794.0
163226.04183.01763.0779.0
175874.0954.0922.02201.0
184319.51647.51870.52113.5
192042.753768.751862.752276.75
PFM
ACGT
010.2040.3180.1990.278
020.0950.1420.0580.705
030.2450.0950.1970.463
040.0650.2330.0650.637
050.0710.1440.2490.536
060.9310.0170.0380.014
070.0130.0190.0080.96
080.9590.0160.0080.017
090.020.9540.0160.01
100.0050.9810.0060.008
110.010.8560.0080.126
120.8520.0130.020.115
130.1240.0460.7570.073
140.0830.8180.0320.067
150.2440.1810.0930.482
160.3240.420.1770.078
170.590.0960.0930.221
180.4340.1660.1880.212
190.2050.3790.1870.229
PWM
ACGT
01-0.2010.24-0.2270.108
02-0.963-0.567-1.451.036
03-0.021-0.971-0.2360.617
04-1.34-0.071-1.350.935
05-1.25-0.554-0.0030.761
061.314-2.659-1.879-2.883
07-2.974-2.561-3.3741.345
081.344-2.737-3.398-2.677
09-2.521.339-2.756-3.173
10-3.8441.366-3.656-3.434
11-3.2421.23-3.422-0.682
121.225-2.974-2.496-0.774
13-0.702-1.6931.108-1.229
14-1.0981.184-2.041-1.317
15-0.022-0.325-0.9860.656
160.260.519-0.344-1.159
170.859-0.957-0.991-0.122
180.551-0.412-0.285-0.163
19-0.1970.415-0.289-0.089
Standard thresholds
P-value Threshold
0.001 2.66801
0.0005 3.84366
0.0001 6.31841