ZF69B.H12INVIVO.0.P.C motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZF69B.H12INVIVO.0.P.C
Gene (human)	ZFP69B (GeneCards)
Gene synonyms (human)	ZNF643
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	C

Motif length	18
Consensus	vdGWGGCTGGARMvvdvv
GC content	53.48%
Information content (bits; total / per base)	16.216 / 0.901
Data sources	ChIP-Seq
Aligned words	1000

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (4)	0.953	0.966	0.924	0.944	0.972	0.976	6.052	6.269	376.031	380.824

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF642-like {2.3.3.31} (TFClass)
TFClass ID	TFClass: 2.3.3.31.2
HGNC	HGNC:28053
MGI
EntrezGene (human)	GeneID:65243 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZF69B_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q9UJL9 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZF69B.H12INVIVO.0.P.C.pcm
PWM	ZF69B.H12INVIVO.0.P.C.pwm
PFM	ZF69B.H12INVIVO.0.P.C.pfm
Alignment	ZF69B.H12INVIVO.0.P.C.words.tsv
Threshold to P-value map	ZF69B.H12INVIVO.0.P.C.thr
Motif in other formats
JASPAR format	ZF69B.H12INVIVO.0.P.C_jaspar_format.txt
MEME format	ZF69B.H12INVIVO.0.P.C_meme_format.meme
Transfac format	ZF69B.H12INVIVO.0.P.C_transfac_format.txt
Homer format	ZF69B.H12INVIVO.0.P.C_homer_format_0.001.txt ZF69B.H12INVIVO.0.P.C_homer_format_0.0005.txt ZF69B.H12INVIVO.0.P.C_homer_format_0.0001.txt

PCM

	A	C	G	T
01	442.0	155.0	267.0	136.0
02	229.0	58.0	459.0	254.0
03	9.0	5.0	982.0	4.0
04	141.0	33.0	87.0	739.0
05	34.0	2.0	800.0	164.0
06	34.0	17.0	857.0	92.0
07	10.0	973.0	2.0	15.0
08	59.0	11.0	1.0	929.0
09	32.0	2.0	960.0	6.0
10	13.0	0.0	987.0	0.0
11	990.0	3.0	2.0	5.0
12	567.0	26.0	221.0	186.0
13	671.0	169.0	139.0	21.0
14	272.0	290.0	321.0	117.0
15	512.0	152.0	196.0	140.0
16	411.0	135.0	316.0	138.0
17	272.0	170.0	424.0	134.0
18	445.0	187.0	218.0	150.0

PFM

	A	C	G	T
01	0.442	0.155	0.267	0.136
02	0.229	0.058	0.459	0.254
03	0.009	0.005	0.982	0.004
04	0.141	0.033	0.087	0.739
05	0.034	0.002	0.8	0.164
06	0.034	0.017	0.857	0.092
07	0.01	0.973	0.002	0.015
08	0.059	0.011	0.001	0.929
09	0.032	0.002	0.96	0.006
10	0.013	0.0	0.987	0.0
11	0.99	0.003	0.002	0.005
12	0.567	0.026	0.221	0.186
13	0.671	0.169	0.139	0.021
14	0.272	0.29	0.321	0.117
15	0.512	0.152	0.196	0.14
16	0.411	0.135	0.316	0.138
17	0.272	0.17	0.424	0.134
18	0.445	0.187	0.218	0.15

PWM

	A	C	G	T
01	0.567	-0.474	0.065	-0.603
02	-0.087	-1.439	0.604	0.016
03	-3.156	-3.622	1.363	-3.783
04	-0.567	-1.981	-1.043	1.079
05	-1.952	-4.213	1.158	-0.418
06	-1.952	-2.598	1.227	-0.988
07	-3.066	1.354	-4.213	-2.711
08	-1.422	-2.985	-4.525	1.308
09	-2.01	-4.213	1.34	-3.484
10	-2.839	-4.982	1.368	-4.982
11	1.371	-3.975	-4.213	-3.622
12	0.815	-2.206	-0.122	-0.293
13	0.983	-0.388	-0.582	-2.405
14	0.084	0.147	0.248	-0.752
15	0.713	-0.493	-0.241	-0.574
16	0.494	-0.61	0.233	-0.589
17	0.084	-0.382	0.525	-0.618
18	0.574	-0.288	-0.136	-0.506

Standard thresholds

P-value	Threshold
0.001	2.14161
0.0005	3.44321
0.0001	6.15896