ZF64B.H12INVIVO.1.P.B motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZF64B.H12INVIVO.1.P.B
Gene (human)	ZFP64 (GeneCards)
Gene synonyms (human)	ZNF338
Gene (mouse)	Zfp64
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	1
Quality	B

Motif length	14
Consensus	vdRCCCnGSRMbMW
GC content	62.32%
Information content (bits; total / per base)	10.022 / 0.716
Data sources	ChIP-Seq
Aligned words	830

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Mouse	2 (14)	0.784	0.795	0.69	0.709	0.769	0.78	2.826	2.949	125.959	150.959

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.76
HGNC	HGNC:15940
MGI	MGI:107342
EntrezGene (human)	GeneID:55734 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZF64B_HUMAN
UniProt ID (mouse)	ZFP64_MOUSE
UniProt AC (human)	Q9NTW7 (TFClass)
UniProt AC (mouse)	Q99KE8 (TFClass)
GRECO-DB-TF	no

ChIP-Seq	0 human, 2 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZF64B.H12INVIVO.1.P.B.pcm
PWM	ZF64B.H12INVIVO.1.P.B.pwm
PFM	ZF64B.H12INVIVO.1.P.B.pfm
Alignment	ZF64B.H12INVIVO.1.P.B.words.tsv
Threshold to P-value map	ZF64B.H12INVIVO.1.P.B.thr
Motif in other formats
JASPAR format	ZF64B.H12INVIVO.1.P.B_jaspar_format.txt
MEME format	ZF64B.H12INVIVO.1.P.B_meme_format.meme
Transfac format	ZF64B.H12INVIVO.1.P.B_transfac_format.txt
Homer format	ZF64B.H12INVIVO.1.P.B_homer_format_0.001.txt ZF64B.H12INVIVO.1.P.B_homer_format_0.0005.txt ZF64B.H12INVIVO.1.P.B_homer_format_0.0001.txt

PCM

	A	C	G	T
01	163.0	192.0	369.0	106.0
02	330.0	106.0	276.0	118.0
03	265.0	37.0	484.0	44.0
04	37.0	715.0	60.0	18.0
05	24.0	726.0	37.0	43.0
06	56.0	704.0	14.0	56.0
07	268.0	131.0	214.0	217.0
08	59.0	10.0	736.0	25.0
09	49.0	61.0	664.0	56.0
10	497.0	123.0	194.0	16.0
11	504.0	247.0	67.0	12.0
12	100.0	182.0	102.0	446.0
13	100.0	632.0	84.0	14.0
14	228.0	14.0	61.0	527.0

PFM

	A	C	G	T
01	0.196	0.231	0.445	0.128
02	0.398	0.128	0.333	0.142
03	0.319	0.045	0.583	0.053
04	0.045	0.861	0.072	0.022
05	0.029	0.875	0.045	0.052
06	0.067	0.848	0.017	0.067
07	0.323	0.158	0.258	0.261
08	0.071	0.012	0.887	0.03
09	0.059	0.073	0.8	0.067
10	0.599	0.148	0.234	0.019
11	0.607	0.298	0.081	0.014
12	0.12	0.219	0.123	0.537
13	0.12	0.761	0.101	0.017
14	0.275	0.017	0.073	0.635

PWM

	A	C	G	T
01	-0.239	-0.077	0.572	-0.664
02	0.461	-0.664	0.283	-0.558
03	0.243	-1.688	0.842	-1.522
04	-1.688	1.231	-1.221	-2.364
05	-2.097	1.247	-1.688	-1.544
06	-1.288	1.216	-2.591	-1.288
07	0.254	-0.455	0.031	0.044
08	-1.238	-2.885	1.26	-2.059
09	-1.418	-1.205	1.158	-1.288
10	0.869	-0.517	-0.067	-2.471
11	0.883	0.173	-1.114	-2.727
12	-0.721	-0.13	-0.702	0.761
13	-0.721	1.108	-0.893	-2.591
14	0.093	-2.591	-1.205	0.927

Standard thresholds

P-value	Threshold
0.001	4.67881
0.0005	5.48171
0.0001	7.157215