ZF64B.H12INVITRO.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZF64B.H12INVITRO.0.P.D
Gene (human)	ZFP64 (GeneCards)
Gene synonyms (human)	ZNF338
Gene (mouse)	Zfp64
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	16
Consensus	dSCYnGKRMbMWGbRT
GC content	59.24%
Information content (bits; total / per base)	12.336 / 0.771
Data sources	ChIP-Seq
Aligned words	830

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Mouse	2 (14)	0.878	0.89	0.839	0.857	0.884	0.892	4.763	4.935	227.602	278.721

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.76
HGNC	HGNC:15940
MGI	MGI:107342
EntrezGene (human)	GeneID:55734 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZF64B_HUMAN
UniProt ID (mouse)	ZFP64_MOUSE
UniProt AC (human)	Q9NTW7 (TFClass)
UniProt AC (mouse)	Q99KE8 (TFClass)
GRECO-DB-TF	no

ChIP-Seq	0 human, 2 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZF64B.H12INVITRO.0.P.D.pcm
PWM	ZF64B.H12INVITRO.0.P.D.pwm
PFM	ZF64B.H12INVITRO.0.P.D.pfm
Alignment	ZF64B.H12INVITRO.0.P.D.words.tsv
Threshold to P-value map	ZF64B.H12INVITRO.0.P.D.thr
Motif in other formats
JASPAR format	ZF64B.H12INVITRO.0.P.D_jaspar_format.txt
MEME format	ZF64B.H12INVITRO.0.P.D_meme_format.meme
Transfac format	ZF64B.H12INVITRO.0.P.D_transfac_format.txt
Homer format	ZF64B.H12INVITRO.0.P.D_homer_format_0.001.txt ZF64B.H12INVITRO.0.P.D_homer_format_0.0005.txt ZF64B.H12INVITRO.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	255.0	54.0	437.0	84.0
02	33.0	646.0	112.0	39.0
03	27.0	710.0	59.0	34.0
04	51.0	667.0	40.0	72.0
05	234.0	160.0	261.0	175.0
06	54.0	13.0	717.0	46.0
07	58.0	46.0	655.0	71.0
08	515.0	105.0	197.0	13.0
09	496.0	255.0	68.0	11.0
10	86.0	190.0	112.0	442.0
11	106.0	621.0	91.0	12.0
12	188.0	12.0	91.0	539.0
13	10.0	13.0	799.0	8.0
14	113.0	281.0	123.0	313.0
15	529.0	66.0	173.0	62.0
16	35.0	49.0	44.0	702.0

PFM

	A	C	G	T
01	0.307	0.065	0.527	0.101
02	0.04	0.778	0.135	0.047
03	0.033	0.855	0.071	0.041
04	0.061	0.804	0.048	0.087
05	0.282	0.193	0.314	0.211
06	0.065	0.016	0.864	0.055
07	0.07	0.055	0.789	0.086
08	0.62	0.127	0.237	0.016
09	0.598	0.307	0.082	0.013
10	0.104	0.229	0.135	0.533
11	0.128	0.748	0.11	0.014
12	0.227	0.014	0.11	0.649
13	0.012	0.016	0.963	0.01
14	0.136	0.339	0.148	0.377
15	0.637	0.08	0.208	0.075
16	0.042	0.059	0.053	0.846

PWM

	A	C	G	T
01	0.205	-1.324	0.741	-0.893
02	-1.797	1.13	-0.61	-1.637
03	-1.987	1.224	-1.238	-1.769
04	-1.379	1.162	-1.613	-1.043
05	0.119	-0.258	0.228	-0.169
06	-1.324	-2.657	1.234	-1.479
07	-1.254	-1.479	1.144	-1.057
08	0.904	-0.673	-0.051	-2.657
09	0.867	0.205	-1.099	-2.803
10	-0.869	-0.087	-0.61	0.752
11	-0.664	1.091	-0.814	-2.727
12	-0.098	-2.727	-0.814	0.95
13	-2.885	-2.657	1.342	-3.073
14	-0.601	0.301	-0.517	0.408
15	0.931	-1.128	-0.18	-1.189
16	-1.741	-1.418	-1.522	1.213

Standard thresholds

P-value	Threshold
0.001	4.17476
0.0005	5.08831
0.0001	7.01186