MotifZEB2.H12INVITRO.0.P.D
Gene (human)ZEB2
(GeneCards)
Gene synonyms (human)KIAA0569, SIP1, ZFHX1B, ZFX1B
Gene (mouse)Zeb2
Gene synonyms (mouse)Sip1, Zfhx1b, Zfx1b
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
D
Motif length8
ConsensusvCAGGTGd
GC content59.51%
Information content (bits; total / per base)9.698 / 1.212
Data sourcesChIP-Seq
Aligned words1003

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 4 (27) 0.652 0.761 0.471 0.6 0.681 0.822 1.606 2.34 21.959 87.921
TF superclassHelix-turn-helix domains {3} (TFClass)
TF classHomeo domain factors {3.1} (TFClass)
TF familyHD-ZF {3.1.8} (TFClass)
TF subfamilyZEB {3.1.8.3} (TFClass)
TFClass IDTFClass: 3.1.8.3.2
HGNCHGNC:14881
MGIMGI:1344407
EntrezGene (human)GeneID:9839
(SSTAR profile)
EntrezGene (mouse)GeneID:24136
(SSTAR profile)
UniProt ID (human)ZEB2_HUMAN
UniProt ID (mouse)ZEB2_MOUSE
UniProt AC (human)O60315
(TFClass)
UniProt AC (mouse)Q9R0G7
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 4 human, 0 mouse
HT-SELEX 0
Methyl-HT-SELEX 0
PCM
ACGT
01245.0337.0311.0110.0
0279.0840.073.011.0
03994.03.04.02.0
045.05.0989.04.0
0513.06.0982.02.0
0668.05.09.0921.0
07171.08.0810.014.0
08417.0122.0271.0193.0
PFM
ACGT
010.2440.3360.310.11
020.0790.8370.0730.011
030.9910.0030.0040.002
040.0050.0050.9860.004
050.0130.0060.9790.002
060.0680.0050.0090.918
070.170.0080.8080.014
080.4160.1220.270.192
PWM
ACGT
01-0.0230.2940.214-0.815
02-1.141.204-1.217-2.988
031.372-3.978-3.786-4.216
04-3.625-3.6251.367-3.786
05-2.842-3.4871.36-4.216
06-1.287-3.625-3.1581.296
07-0.38-3.2561.168-2.776
080.506-0.7130.077-0.26
Standard thresholds
P-value Threshold
0.001 4.73646
0.0005 5.87081
0.0001 7.76699