| Motif | ZEB2.H12INVITRO.0.P.D |
| Gene (human) | ZEB2 (GeneCards) |
| Gene synonyms (human) | KIAA0569, SIP1, ZFHX1B, ZFX1B |
| Gene (mouse) | Zeb2 |
| Gene synonyms (mouse) | Sip1, Zfhx1b, Zfx1b |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | D |
| Motif | ZEB2.H12INVITRO.0.P.D |
| Gene (human) | ZEB2 (GeneCards) |
| Gene synonyms (human) | KIAA0569, SIP1, ZFHX1B, ZFX1B |
| Gene (mouse) | Zeb2 |
| Gene synonyms (mouse) | Sip1, Zfhx1b, Zfx1b |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | D |
| Motif length | 8 |
| Consensus | vCAGGTGd |
| GC content | 59.51% |
| Information content (bits; total / per base) | 9.698 / 1.212 |
| Data sources | ChIP-Seq |
| Aligned words | 1003 |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Human | 4 (27) | 0.652 | 0.761 | 0.471 | 0.6 | 0.681 | 0.822 | 1.606 | 2.34 | 21.959 | 87.921 |
| TF superclass | Helix-turn-helix domains {3} (TFClass) |
| TF class | Homeo domain factors {3.1} (TFClass) |
| TF family | HD-ZF {3.1.8} (TFClass) |
| TF subfamily | ZEB {3.1.8.3} (TFClass) |
| TFClass ID | TFClass: 3.1.8.3.2 |
| HGNC | HGNC:14881 |
| MGI | MGI:1344407 |
| EntrezGene (human) | GeneID:9839 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:24136 (SSTAR profile) |
| UniProt ID (human) | ZEB2_HUMAN |
| UniProt ID (mouse) | ZEB2_MOUSE |
| UniProt AC (human) | O60315 (TFClass) |
| UniProt AC (mouse) | Q9R0G7 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 4 human, 0 mouse |
| HT-SELEX | 0 |
| Methyl-HT-SELEX | 0 |
| PCM | ZEB2.H12INVITRO.0.P.D.pcm |
| PWM | ZEB2.H12INVITRO.0.P.D.pwm |
| PFM | ZEB2.H12INVITRO.0.P.D.pfm |
| Alignment | ZEB2.H12INVITRO.0.P.D.words.tsv |
| Threshold to P-value map | ZEB2.H12INVITRO.0.P.D.thr |
| Motif in other formats | |
| JASPAR format | ZEB2.H12INVITRO.0.P.D_jaspar_format.txt |
| MEME format | ZEB2.H12INVITRO.0.P.D_meme_format.meme |
| Transfac format | ZEB2.H12INVITRO.0.P.D_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 245.0 | 337.0 | 311.0 | 110.0 |
| 02 | 79.0 | 840.0 | 73.0 | 11.0 |
| 03 | 994.0 | 3.0 | 4.0 | 2.0 |
| 04 | 5.0 | 5.0 | 989.0 | 4.0 |
| 05 | 13.0 | 6.0 | 982.0 | 2.0 |
| 06 | 68.0 | 5.0 | 9.0 | 921.0 |
| 07 | 171.0 | 8.0 | 810.0 | 14.0 |
| 08 | 417.0 | 122.0 | 271.0 | 193.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.244 | 0.336 | 0.31 | 0.11 |
| 02 | 0.079 | 0.837 | 0.073 | 0.011 |
| 03 | 0.991 | 0.003 | 0.004 | 0.002 |
| 04 | 0.005 | 0.005 | 0.986 | 0.004 |
| 05 | 0.013 | 0.006 | 0.979 | 0.002 |
| 06 | 0.068 | 0.005 | 0.009 | 0.918 |
| 07 | 0.17 | 0.008 | 0.808 | 0.014 |
| 08 | 0.416 | 0.122 | 0.27 | 0.192 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.023 | 0.294 | 0.214 | -0.815 |
| 02 | -1.14 | 1.204 | -1.217 | -2.988 |
| 03 | 1.372 | -3.978 | -3.786 | -4.216 |
| 04 | -3.625 | -3.625 | 1.367 | -3.786 |
| 05 | -2.842 | -3.487 | 1.36 | -4.216 |
| 06 | -1.287 | -3.625 | -3.158 | 1.296 |
| 07 | -0.38 | -3.256 | 1.168 | -2.776 |
| 08 | 0.506 | -0.713 | 0.077 | -0.26 |
| P-value | Threshold |
|---|---|
| 0.001 | 4.73646 |
| 0.0005 | 5.87081 |
| 0.0001 | 7.76699 |