MotifZEB1.H12INVITRO.0.P.D
Gene (human)ZEB1
(GeneCards)
Gene synonyms (human)AREB6, TCF8
Gene (mouse)Zeb1
Gene synonyms (mouse)Tcf8, Zfhx1a, Zfx1a, Zfx1ha
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
D
Motif length11
ConsensusvbvCAGGTGhR
GC content64.3%
Information content (bits; total / per base)12.463 / 1.133
Data sourcesChIP-Seq
Aligned words1000

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 13 (76) 0.791 0.913 0.614 0.749 0.819 0.94 2.73 3.887 51.659 189.921
TF superclassHelix-turn-helix domains {3} (TFClass)
TF classHomeo domain factors {3.1} (TFClass)
TF familyHD-ZF {3.1.8} (TFClass)
TF subfamilyZEB {3.1.8.3} (TFClass)
TFClass IDTFClass: 3.1.8.3.1
HGNCHGNC:11642
MGIMGI:1344313
EntrezGene (human)GeneID:6935
(SSTAR profile)
EntrezGene (mouse)GeneID:21417
(SSTAR profile)
UniProt ID (human)ZEB1_HUMAN
UniProt ID (mouse)ZEB1_MOUSE
UniProt AC (human)P37275
(TFClass)
UniProt AC (mouse)Q64318
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 13 human, 0 mouse
HT-SELEX 0
Methyl-HT-SELEX 0
PCM
ACGT
01126.0265.0491.0118.0
0259.0353.0400.0188.0
03253.0358.0319.070.0
0422.0966.010.02.0
05999.00.00.01.0
060.02.0998.00.0
070.02.0997.01.0
082.01.00.0997.0
09192.01.0805.02.0
10480.0173.0124.0223.0
11155.0114.0694.037.0
PFM
ACGT
010.1260.2650.4910.118
020.0590.3530.40.188
030.2530.3580.3190.07
040.0220.9660.010.002
050.9990.00.00.001
060.00.0020.9980.0
070.00.0020.9970.001
080.0020.0010.00.997
090.1920.0010.8050.002
100.480.1730.1240.223
110.1550.1140.6940.037
PWM
ACGT
01-0.6780.0580.672-0.743
02-1.4220.3430.467-0.283
030.0120.3570.242-1.255
04-2.3621.347-3.066-4.213
051.38-4.982-4.982-4.525
06-4.982-4.2131.379-4.982
07-4.982-4.2131.378-4.525
08-4.213-4.525-4.9821.378
09-0.262-4.5251.165-4.213
100.649-0.365-0.694-0.113
11-0.474-0.7771.017-1.872
Standard thresholds
P-value Threshold
0.001 3.288475
0.0005 4.597735
0.0001 7.58444