Motif | ZEB1.H12CORE.0.P.B |
Gene (human) | ZEB1 (GeneCards) |
Gene synonyms (human) | AREB6, TCF8 |
Gene (mouse) | Zeb1 |
Gene synonyms (mouse) | Tcf8, Zfhx1a, Zfx1a, Zfx1ha |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 0 |
Quality | B |
Motif | ZEB1.H12CORE.0.P.B |
Gene (human) | ZEB1 (GeneCards) |
Gene synonyms (human) | AREB6, TCF8 |
Gene (mouse) | Zeb1 |
Gene synonyms (mouse) | Tcf8, Zfhx1a, Zfx1a, Zfx1ha |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 0 |
Quality | B |
Motif length | 11 |
Consensus | vbvCAGGTGhR |
GC content | 64.3% |
Information content (bits; total / per base) | 12.463 / 1.133 |
Data sources | ChIP-Seq |
Aligned words | 1000 |
ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
---|---|---|---|---|---|---|---|---|---|---|---|
Human | 13 (76) | 0.791 | 0.913 | 0.614 | 0.749 | 0.819 | 0.94 | 2.73 | 3.887 | 51.659 | 189.921 |
TF superclass | Helix-turn-helix domains {3} (TFClass) |
TF class | Homeo domain factors {3.1} (TFClass) |
TF family | HD-ZF {3.1.8} (TFClass) |
TF subfamily | ZEB {3.1.8.3} (TFClass) |
TFClass ID | TFClass: 3.1.8.3.1 |
HGNC | HGNC:11642 |
MGI | MGI:1344313 |
EntrezGene (human) | GeneID:6935 (SSTAR profile) |
EntrezGene (mouse) | GeneID:21417 (SSTAR profile) |
UniProt ID (human) | ZEB1_HUMAN |
UniProt ID (mouse) | ZEB1_MOUSE |
UniProt AC (human) | P37275 (TFClass) |
UniProt AC (mouse) | Q64318 (TFClass) |
GRECO-DB-TF | yes |
ChIP-Seq | 13 human, 0 mouse |
HT-SELEX | 0 |
Methyl-HT-SELEX | 0 |
PCM | ZEB1.H12CORE.0.P.B.pcm |
PWM | ZEB1.H12CORE.0.P.B.pwm |
PFM | ZEB1.H12CORE.0.P.B.pfm |
Alignment | ZEB1.H12CORE.0.P.B.words.tsv |
Threshold to P-value map | ZEB1.H12CORE.0.P.B.thr |
Motif in other formats | |
JASPAR format | ZEB1.H12CORE.0.P.B_jaspar_format.txt |
MEME format | ZEB1.H12CORE.0.P.B_meme_format.meme |
Transfac format | ZEB1.H12CORE.0.P.B_transfac_format.txt |
Homer format |
A | C | G | T | |
---|---|---|---|---|
01 | 126.0 | 265.0 | 491.0 | 118.0 |
02 | 59.0 | 353.0 | 400.0 | 188.0 |
03 | 253.0 | 358.0 | 319.0 | 70.0 |
04 | 22.0 | 966.0 | 10.0 | 2.0 |
05 | 999.0 | 0.0 | 0.0 | 1.0 |
06 | 0.0 | 2.0 | 998.0 | 0.0 |
07 | 0.0 | 2.0 | 997.0 | 1.0 |
08 | 2.0 | 1.0 | 0.0 | 997.0 |
09 | 192.0 | 1.0 | 805.0 | 2.0 |
10 | 480.0 | 173.0 | 124.0 | 223.0 |
11 | 155.0 | 114.0 | 694.0 | 37.0 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.126 | 0.265 | 0.491 | 0.118 |
02 | 0.059 | 0.353 | 0.4 | 0.188 |
03 | 0.253 | 0.358 | 0.319 | 0.07 |
04 | 0.022 | 0.966 | 0.01 | 0.002 |
05 | 0.999 | 0.0 | 0.0 | 0.001 |
06 | 0.0 | 0.002 | 0.998 | 0.0 |
07 | 0.0 | 0.002 | 0.997 | 0.001 |
08 | 0.002 | 0.001 | 0.0 | 0.997 |
09 | 0.192 | 0.001 | 0.805 | 0.002 |
10 | 0.48 | 0.173 | 0.124 | 0.223 |
11 | 0.155 | 0.114 | 0.694 | 0.037 |
A | C | G | T | |
---|---|---|---|---|
01 | -0.678 | 0.058 | 0.672 | -0.743 |
02 | -1.422 | 0.343 | 0.467 | -0.283 |
03 | 0.012 | 0.357 | 0.242 | -1.255 |
04 | -2.362 | 1.347 | -3.066 | -4.213 |
05 | 1.38 | -4.982 | -4.982 | -4.525 |
06 | -4.982 | -4.213 | 1.379 | -4.982 |
07 | -4.982 | -4.213 | 1.378 | -4.525 |
08 | -4.213 | -4.525 | -4.982 | 1.378 |
09 | -0.262 | -4.525 | 1.165 | -4.213 |
10 | 0.649 | -0.365 | -0.694 | -0.113 |
11 | -0.474 | -0.777 | 1.017 | -1.872 |
P-value | Threshold |
---|---|
0.001 | 3.288475 |
0.0005 | 4.597735 |
0.0001 | 7.58444 |