ZBTB6.H12INVITRO.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZBTB6.H12INVITRO.0.P.D
Gene (human)	ZBTB6 (GeneCards)
Gene synonyms (human)	ZID, ZNF482
Gene (mouse)	Zbtb6
Gene synonyms (mouse)	Zfp482, Znf482
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	15
Consensus	vRRhSMTRGAGMbvv
GC content	64.19%
Information content (bits; total / per base)	13.048 / 0.87
Data sources	ChIP-Seq
Aligned words	998

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	2 (12)	0.885	0.909	0.75	0.806	0.898	0.921	3.589	3.864	248.852	314.276

rSNP benchmarking, ADASTRA	odds-ratio	-log-Fisher's P	Pearson r	Kendall tau
#	6.864	2.106	0.205	0.153

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZBTB6-like {2.3.3.11} (TFClass)
TFClass ID	TFClass: 2.3.3.11.1
HGNC	HGNC:16764
MGI	MGI:2442998
EntrezGene (human)	GeneID:10773 (SSTAR profile)
EntrezGene (mouse)	GeneID:241322 (SSTAR profile)
UniProt ID (human)	ZBTB6_HUMAN
UniProt ID (mouse)	ZBTB6_MOUSE
UniProt AC (human)	Q15916 (TFClass)
UniProt AC (mouse)	Q8K088 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZBTB6.H12INVITRO.0.P.D.pcm
PWM	ZBTB6.H12INVITRO.0.P.D.pwm
PFM	ZBTB6.H12INVITRO.0.P.D.pfm
Alignment	ZBTB6.H12INVITRO.0.P.D.words.tsv
Threshold to P-value map	ZBTB6.H12INVITRO.0.P.D.thr
Motif in other formats
JASPAR format	ZBTB6.H12INVITRO.0.P.D_jaspar_format.txt
MEME format	ZBTB6.H12INVITRO.0.P.D_meme_format.meme
Transfac format	ZBTB6.H12INVITRO.0.P.D_transfac_format.txt
Homer format	ZBTB6.H12INVITRO.0.P.D_homer_format_0.001.txt ZBTB6.H12INVITRO.0.P.D_homer_format_0.0005.txt ZBTB6.H12INVITRO.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	276.0	189.0	419.0	114.0
02	121.0	51.0	748.0	78.0
03	271.0	31.0	667.0	29.0
04	265.0	306.0	44.0	383.0
05	22.0	177.0	701.0	98.0
06	359.0	608.0	20.0	11.0
07	29.0	116.0	22.0	831.0
08	225.0	10.0	680.0	83.0
09	0.0	3.0	995.0	0.0
10	997.0	0.0	0.0	1.0
11	1.0	5.0	992.0	0.0
12	141.0	770.0	67.0	20.0
13	111.0	536.0	120.0	231.0
14	259.0	156.0	431.0	152.0
15	141.0	257.0	488.0	112.0

PFM

	A	C	G	T
01	0.277	0.189	0.42	0.114
02	0.121	0.051	0.749	0.078
03	0.272	0.031	0.668	0.029
04	0.266	0.307	0.044	0.384
05	0.022	0.177	0.702	0.098
06	0.36	0.609	0.02	0.011
07	0.029	0.116	0.022	0.833
08	0.225	0.01	0.681	0.083
09	0.0	0.003	0.997	0.0
10	0.999	0.0	0.0	0.001
11	0.001	0.005	0.994	0.0
12	0.141	0.772	0.067	0.02
13	0.111	0.537	0.12	0.231
14	0.26	0.156	0.432	0.152
15	0.141	0.258	0.489	0.112

PWM

	A	C	G	T
01	0.1	-0.276	0.516	-0.775
02	-0.716	-1.561	1.093	-1.148
03	0.082	-2.038	0.979	-2.101
04	0.06	0.203	-1.704	0.426
05	-2.36	-0.34	1.029	-0.924
06	0.362	0.887	-2.448	-2.983
07	-2.101	-0.758	-2.36	1.198
08	-0.103	-3.065	0.998	-1.087
09	-4.98	-3.973	1.378	-4.98
10	1.38	-4.98	-4.98	-4.523
11	-4.523	-3.62	1.375	-4.98
12	-0.565	1.122	-1.296	-2.448
13	-0.801	0.761	-0.725	-0.076
14	0.037	-0.465	0.544	-0.491
15	-0.565	0.029	0.667	-0.793

Standard thresholds

P-value	Threshold
0.001	3.74676
0.0005	4.88106
0.0001	7.12431