ZBT49.H12INVIVO.0.P.C motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZBT49.H12INVIVO.0.P.C
Gene (human)	ZBTB49 (GeneCards)
Gene synonyms (human)	ZNF509
Gene (mouse)	Zbtb49
Gene synonyms (mouse)	Zfp509, Znf509
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	C

Motif length	23
Consensus	GWGACCdKMCMKGMvRAARKRRb
GC content	54.85%
Information content (bits; total / per base)	19.988 / 0.869
Data sources	ChIP-Seq
Aligned words	73

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (2)	0.809	0.809	0.754	0.754	0.848	0.848	7.555	7.555	30.432	30.432

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.38
HGNC	HGNC:19883
MGI	MGI:1922329
EntrezGene (human)	GeneID:166793 (SSTAR profile)
EntrezGene (mouse)	GeneID:75079 (SSTAR profile)
UniProt ID (human)	ZBT49_HUMAN
UniProt ID (mouse)	ZBT49_MOUSE
UniProt AC (human)	Q6ZSB9 (TFClass)
UniProt AC (mouse)	Q8BXX2 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZBT49.H12INVIVO.0.P.C.pcm
PWM	ZBT49.H12INVIVO.0.P.C.pwm
PFM	ZBT49.H12INVIVO.0.P.C.pfm
Alignment	ZBT49.H12INVIVO.0.P.C.words.tsv
Threshold to P-value map	ZBT49.H12INVIVO.0.P.C.thr
Motif in other formats
JASPAR format	ZBT49.H12INVIVO.0.P.C_jaspar_format.txt
MEME format	ZBT49.H12INVIVO.0.P.C_meme_format.meme
Transfac format	ZBT49.H12INVIVO.0.P.C_transfac_format.txt
Homer format	ZBT49.H12INVIVO.0.P.C_homer_format_0.001.txt ZBT49.H12INVIVO.0.P.C_homer_format_0.0005.txt ZBT49.H12INVIVO.0.P.C_homer_format_0.0001.txt

PCM

	A	C	G	T
01	8.0	3.0	58.0	4.0
02	19.0	4.0	2.0	48.0
03	3.0	1.0	67.0	2.0
04	59.0	9.0	2.0	3.0
05	1.0	72.0	0.0	0.0
06	10.0	57.0	4.0	2.0
07	41.0	6.0	10.0	16.0
08	3.0	5.0	49.0	16.0
09	9.0	54.0	8.0	2.0
10	7.0	60.0	4.0	2.0
11	54.0	9.0	2.0	8.0
12	13.0	3.0	40.0	17.0
13	7.0	1.0	62.0	3.0
14	15.0	51.0	6.0	1.0
15	25.0	28.0	15.0	5.0
16	49.0	7.0	15.0	2.0
17	67.0	1.0	2.0	3.0
18	55.0	15.0	1.0	2.0
19	52.0	4.0	15.0	2.0
20	10.0	1.0	12.0	50.0
21	9.0	6.0	56.0	2.0
22	25.0	2.0	46.0	0.0
23	8.0	20.0	26.0	19.0

PFM

	A	C	G	T
01	0.11	0.041	0.795	0.055
02	0.26	0.055	0.027	0.658
03	0.041	0.014	0.918	0.027
04	0.808	0.123	0.027	0.041
05	0.014	0.986	0.0	0.0
06	0.137	0.781	0.055	0.027
07	0.562	0.082	0.137	0.219
08	0.041	0.068	0.671	0.219
09	0.123	0.74	0.11	0.027
10	0.096	0.822	0.055	0.027
11	0.74	0.123	0.027	0.11
12	0.178	0.041	0.548	0.233
13	0.096	0.014	0.849	0.041
14	0.205	0.699	0.082	0.014
15	0.342	0.384	0.205	0.068
16	0.671	0.096	0.205	0.027
17	0.918	0.014	0.027	0.041
18	0.753	0.205	0.014	0.027
19	0.712	0.055	0.205	0.027
20	0.137	0.014	0.164	0.685
21	0.123	0.082	0.767	0.027
22	0.342	0.027	0.63	0.0
23	0.11	0.274	0.356	0.26

PWM

	A	C	G	T
01	-0.756	-1.557	1.117	-1.337
02	0.038	-1.337	-1.839	0.932
03	-1.557	-2.232	1.259	-1.839
04	1.134	-0.651	-1.839	-1.557
05	-2.232	1.33	-2.891	-2.891
06	-0.557	1.1	-1.337	-1.839
07	0.778	-1.005	-0.557	-0.124
08	-1.557	-1.157	0.952	-0.124
09	-0.651	1.047	-0.756	-1.839
10	-0.873	1.151	-1.337	-1.839
11	1.047	-0.651	-1.839	-0.756
12	-0.317	-1.557	0.754	-0.067
13	-0.873	-2.232	1.183	-1.557
14	-0.184	0.991	-1.005	-2.232
15	0.3	0.409	-0.184	-1.157
16	0.952	-0.873	-0.184	-1.839
17	1.259	-2.232	-1.839	-1.557
18	1.065	-0.184	-2.232	-1.839
19	1.01	-1.337	-0.184	-1.839
20	-0.557	-2.232	-0.391	0.972
21	-0.651	-1.005	1.083	-1.839
22	0.3	-1.839	0.89	-2.891
23	-0.756	0.087	0.337	0.038

Standard thresholds

P-value	Threshold
0.001	2.52081
0.0005	3.63101
0.0001	6.00271