ZBT44.H12INVITRO.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZBT44.H12INVITRO.0.P.D
Gene (human)	ZBTB44 (GeneCards)
Gene synonyms (human)	BTBD15, ZNF851
Gene (mouse)	Zbtb44
Gene synonyms (mouse)	Btbd15
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	17
Consensus	bdbhdvMTGCAKbdbhb
GC content	48.43%
Information content (bits; total / per base)	10.158 / 0.598
Data sources	ChIP-Seq
Aligned words	1001

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (6)	0.816	0.83	0.664	0.687	0.715	0.729	1.948	2.021	121.283	142.268

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.28
HGNC	HGNC:25001
MGI	MGI:1925123
EntrezGene (human)	GeneID:29068 (SSTAR profile)
EntrezGene (mouse)	GeneID:235132 (SSTAR profile)
UniProt ID (human)	ZBT44_HUMAN
UniProt ID (mouse)	ZBT44_MOUSE
UniProt AC (human)	Q8NCP5 (TFClass)
UniProt AC (mouse)	Q8R0A2 (TFClass)
GRECO-DB-TF	no

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZBT44.H12INVITRO.0.P.D.pcm
PWM	ZBT44.H12INVITRO.0.P.D.pwm
PFM	ZBT44.H12INVITRO.0.P.D.pfm
Alignment	ZBT44.H12INVITRO.0.P.D.words.tsv
Threshold to P-value map	ZBT44.H12INVITRO.0.P.D.thr
Motif in other formats
JASPAR format	ZBT44.H12INVITRO.0.P.D_jaspar_format.txt
MEME format	ZBT44.H12INVITRO.0.P.D_meme_format.meme
Transfac format	ZBT44.H12INVITRO.0.P.D_transfac_format.txt
Homer format	ZBT44.H12INVITRO.0.P.D_homer_format_0.001.txt ZBT44.H12INVITRO.0.P.D_homer_format_0.0005.txt ZBT44.H12INVITRO.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	148.0	373.0	167.0	313.0
02	178.0	109.0	197.0	517.0
03	104.0	229.0	391.0	277.0
04	153.0	331.0	85.0	432.0
05	213.0	97.0	254.0	437.0
06	181.0	281.0	451.0	88.0
07	244.0	515.0	20.0	222.0
08	4.0	7.0	3.0	987.0
09	4.0	5.0	989.0	3.0
10	5.0	992.0	3.0	1.0
11	881.0	6.0	12.0	102.0
12	91.0	42.0	506.0	362.0
13	66.0	383.0	152.0	400.0
14	185.0	145.0	146.0	525.0
15	104.0	279.0	259.0	359.0
16	137.0	221.0	136.0	507.0
17	94.0	141.0	315.0	451.0

PFM

	A	C	G	T
01	0.148	0.373	0.167	0.313
02	0.178	0.109	0.197	0.516
03	0.104	0.229	0.391	0.277
04	0.153	0.331	0.085	0.432
05	0.213	0.097	0.254	0.437
06	0.181	0.281	0.451	0.088
07	0.244	0.514	0.02	0.222
08	0.004	0.007	0.003	0.986
09	0.004	0.005	0.988	0.003
10	0.005	0.991	0.003	0.001
11	0.88	0.006	0.012	0.102
12	0.091	0.042	0.505	0.362
13	0.066	0.383	0.152	0.4
14	0.185	0.145	0.146	0.524
15	0.104	0.279	0.259	0.359
16	0.137	0.221	0.136	0.506
17	0.094	0.141	0.315	0.451

PWM

	A	C	G	T
01	-0.521	0.397	-0.401	0.222
02	-0.338	-0.822	-0.237	0.722
03	-0.868	-0.088	0.444	0.101
04	-0.488	0.278	-1.067	0.543
05	-0.16	-0.937	0.015	0.555
06	-0.321	0.115	0.586	-1.033
07	-0.025	0.718	-2.451	-0.119
08	-3.784	-3.363	-3.976	1.367
09	-3.784	-3.623	1.369	-3.976
10	-3.623	1.372	-3.976	-4.526
11	1.254	-3.485	-2.91	-0.888
12	-1.0	-1.751	0.701	0.367
13	-1.314	0.423	-0.494	0.466
14	-0.3	-0.541	-0.534	0.737
15	-0.868	0.108	0.034	0.359
16	-0.597	-0.123	-0.604	0.703
17	-0.968	-0.568	0.229	0.586

Standard thresholds

P-value	Threshold
0.001	4.83876
0.0005	5.74886
0.0001	7.39871