ZBT42.H12INVIVO.0.P.C motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZBT42.H12INVIVO.0.P.C
Gene (human)	ZBTB42 (GeneCards)
Gene synonyms (human)
Gene (mouse)	Zbtb42
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	C

Motif length	11
Consensus	bSCAGMTGYKb
GC content	60.29%
Information content (bits; total / per base)	11.986 / 1.09
Data sources	ChIP-Seq
Aligned words	1001

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (5)	0.898	0.93	0.825	0.865	0.861	0.89	2.977	3.068	319.102	376.252

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF238-like {2.3.3.16} (TFClass)
TFClass ID	TFClass: 2.3.3.16.2
HGNC	HGNC:32550
MGI	MGI:3644133
EntrezGene (human)	GeneID:100128927 (SSTAR profile)
EntrezGene (mouse)	GeneID:382639 (SSTAR profile)
UniProt ID (human)	ZBT42_HUMAN
UniProt ID (mouse)	ZBT42_MOUSE
UniProt AC (human)	B2RXF5 (TFClass)
UniProt AC (mouse)	Q811H0 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZBT42.H12INVIVO.0.P.C.pcm
PWM	ZBT42.H12INVIVO.0.P.C.pwm
PFM	ZBT42.H12INVIVO.0.P.C.pfm
Alignment	ZBT42.H12INVIVO.0.P.C.words.tsv
Threshold to P-value map	ZBT42.H12INVIVO.0.P.C.thr
Motif in other formats
JASPAR format	ZBT42.H12INVIVO.0.P.C_jaspar_format.txt
MEME format	ZBT42.H12INVIVO.0.P.C_meme_format.meme
Transfac format	ZBT42.H12INVIVO.0.P.C_transfac_format.txt
Homer format	ZBT42.H12INVIVO.0.P.C_homer_format_0.001.txt ZBT42.H12INVIVO.0.P.C_homer_format_0.0005.txt ZBT42.H12INVIVO.0.P.C_homer_format_0.0001.txt

PCM

	A	C	G	T
01	82.0	169.0	320.0	430.0
02	119.0	581.0	297.0	4.0
03	3.0	997.0	0.0	1.0
04	933.0	1.0	1.0	66.0
05	1.0	4.0	991.0	5.0
06	453.0	509.0	18.0	21.0
07	7.0	0.0	97.0	897.0
08	2.0	1.0	997.0	1.0
09	20.0	330.0	18.0	633.0
10	74.0	73.0	511.0	343.0
11	119.0	275.0	449.0	158.0

PFM

	A	C	G	T
01	0.082	0.169	0.32	0.43
02	0.119	0.58	0.297	0.004
03	0.003	0.996	0.0	0.001
04	0.932	0.001	0.001	0.066
05	0.001	0.004	0.99	0.005
06	0.453	0.508	0.018	0.021
07	0.007	0.0	0.097	0.896
08	0.002	0.001	0.996	0.001
09	0.02	0.33	0.018	0.632
10	0.074	0.073	0.51	0.343
11	0.119	0.275	0.449	0.158

PWM

	A	C	G	T
01	-1.102	-0.389	0.244	0.538
02	-0.736	0.838	0.17	-3.784
03	-3.976	1.377	-4.983	-4.526
04	1.311	-4.526	-4.526	-1.314
05	-4.526	-3.784	1.371	-3.623
06	0.59	0.706	-2.547	-2.406
07	-3.363	-4.983	-0.937	1.272
08	-4.214	-4.526	1.377	-4.526
09	-2.451	0.275	-2.547	0.924
10	-1.202	-1.215	0.71	0.313
11	-0.736	0.094	0.582	-0.456

Standard thresholds

P-value	Threshold
0.001	3.860725
0.0005	5.046375
0.0001	7.501445