ZBT40.H12INVITRO.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZBT40.H12INVITRO.0.P.D
Gene (human)	ZBTB40 (GeneCards)
Gene synonyms (human)	KIAA0478
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	23
Consensus	WKYYAAWAAAACTTTATTKRhAM
GC content	21.52%
Information content (bits; total / per base)	26.527 / 1.153
Data sources	ChIP-Seq
Aligned words	571

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	6 (40)	0.565	0.938	0.545	0.93	0.568	0.963	5.289	16.336	140.639	726.959

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.123
HGNC	HGNC:29045
MGI
EntrezGene (human)	GeneID:9923 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZBT40_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q9NUA8 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	6 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZBT40.H12INVITRO.0.P.D.pcm
PWM	ZBT40.H12INVITRO.0.P.D.pwm
PFM	ZBT40.H12INVITRO.0.P.D.pfm
Alignment	ZBT40.H12INVITRO.0.P.D.words.tsv
Threshold to P-value map	ZBT40.H12INVITRO.0.P.D.thr
Motif in other formats
JASPAR format	ZBT40.H12INVITRO.0.P.D_jaspar_format.txt
MEME format	ZBT40.H12INVITRO.0.P.D_meme_format.meme
Transfac format	ZBT40.H12INVITRO.0.P.D_transfac_format.txt
Homer format	ZBT40.H12INVITRO.0.P.D_homer_format_0.001.txt ZBT40.H12INVITRO.0.P.D_homer_format_0.0005.txt ZBT40.H12INVITRO.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	45.0	34.0	38.0	454.0
02	53.0	44.0	84.0	390.0
03	55.0	346.0	34.0	136.0
04	78.0	378.0	22.0	93.0
05	472.0	28.0	43.0	28.0
06	480.0	32.0	32.0	27.0
07	82.0	34.0	29.0	426.0
08	516.0	17.0	25.0	13.0
09	509.0	36.0	14.0	12.0
10	546.0	6.0	11.0	8.0
11	499.0	3.0	52.0	17.0
12	5.0	557.0	2.0	7.0
13	2.0	8.0	3.0	558.0
14	8.0	8.0	5.0	550.0
15	4.0	25.0	5.0	537.0
16	533.0	24.0	10.0	4.0
17	9.0	10.0	9.0	543.0
18	13.0	31.0	23.0	504.0
19	67.0	26.0	94.0	384.0
20	453.0	18.0	67.0	33.0
21	63.0	312.0	39.0	157.0
22	475.0	47.0	26.0	23.0
23	386.0	73.0	62.0	50.0

PFM

	A	C	G	T
01	0.079	0.06	0.067	0.795
02	0.093	0.077	0.147	0.683
03	0.096	0.606	0.06	0.238
04	0.137	0.662	0.039	0.163
05	0.827	0.049	0.075	0.049
06	0.841	0.056	0.056	0.047
07	0.144	0.06	0.051	0.746
08	0.904	0.03	0.044	0.023
09	0.891	0.063	0.025	0.021
10	0.956	0.011	0.019	0.014
11	0.874	0.005	0.091	0.03
12	0.009	0.975	0.004	0.012
13	0.004	0.014	0.005	0.977
14	0.014	0.014	0.009	0.963
15	0.007	0.044	0.009	0.94
16	0.933	0.042	0.018	0.007
17	0.016	0.018	0.016	0.951
18	0.023	0.054	0.04	0.883
19	0.117	0.046	0.165	0.673
20	0.793	0.032	0.117	0.058
21	0.11	0.546	0.068	0.275
22	0.832	0.082	0.046	0.04
23	0.676	0.128	0.109	0.088

PWM

	A	C	G	T
01	-1.131	-1.4	-1.294	1.149
02	-0.972	-1.153	-0.523	0.998
03	-0.936	0.879	-1.4	-0.048
04	-0.595	0.967	-1.811	-0.423
05	1.188	-1.585	-1.175	-1.585
06	1.205	-1.458	-1.458	-1.619
07	-0.546	-1.4	-1.552	1.086
08	1.277	-2.05	-1.692	-2.292
09	1.263	-1.345	-2.226	-2.363
10	1.333	-2.946	-2.439	-2.712
11	1.244	-3.449	-0.991	-2.05
12	-3.087	1.353	-3.695	-2.822
13	-3.695	-2.712	-3.449	1.355
14	-2.712	-2.712	-3.087	1.341
15	-3.252	-1.692	-3.087	1.317
16	1.309	-1.73	-2.522	-3.252
17	-2.613	-2.522	-2.613	1.328
18	-2.292	-1.488	-1.77	1.254
19	-0.744	-1.655	-0.412	0.983
20	1.147	-1.997	-0.744	-1.429
21	-0.804	0.776	-1.269	0.094
22	1.195	-1.089	-1.655	-1.77
23	0.988	-0.66	-0.82	-1.029

Standard thresholds

P-value	Threshold
0.001	-1.87164
0.0005	-0.39839
0.0001	2.76711