ZBT26.H12INVIVO.0.PSM.A motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZBT26.H12INVIVO.0.PSM.A
Gene (human)	ZBTB26 (GeneCards)
Gene synonyms (human)	KIAA1572, ZNF481
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	A

Motif length	9
Consensus	YTCTGGAdh
GC content	47.67%
Information content (bits; total / per base)	11.029 / 1.225
Data sources	ChIP-Seq + HT-SELEX + Methyl-HT-SELEX
Aligned words	1000

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (7)	0.765	0.825	0.672	0.76	0.747	0.818	2.298	2.7	90.268	130.409

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
Overall, 2 experiments	median	0.723	0.739	0.57	0.616	0.499	0.552
Overall, 2 experiments	best	0.903	0.877	0.685	0.71	0.557	0.61
Methyl HT-SELEX, 1 experiments	median	0.543	0.602	0.454	0.523	0.441	0.495
Methyl HT-SELEX, 1 experiments	best	0.543	0.602	0.454	0.523	0.441	0.495
Non-Methyl HT-SELEX, 1 experiments	median	0.903	0.877	0.685	0.71	0.557	0.61
Non-Methyl HT-SELEX, 1 experiments	best	0.903	0.877	0.685	0.71	0.557	0.61

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZBTB6-like {2.3.3.11} (TFClass)
TFClass ID	TFClass: 2.3.3.11.2
HGNC	HGNC:23383
MGI
EntrezGene (human)	GeneID:57684 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZBT26_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q9HCK0 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	1
Methyl-HT-SELEX	1

PCM	ZBT26.H12INVIVO.0.PSM.A.pcm
PWM	ZBT26.H12INVIVO.0.PSM.A.pwm
PFM	ZBT26.H12INVIVO.0.PSM.A.pfm
Alignment	ZBT26.H12INVIVO.0.PSM.A.words.tsv
Threshold to P-value map	ZBT26.H12INVIVO.0.PSM.A.thr
Motif in other formats
JASPAR format	ZBT26.H12INVIVO.0.PSM.A_jaspar_format.txt
MEME format	ZBT26.H12INVIVO.0.PSM.A_meme_format.meme
Transfac format	ZBT26.H12INVIVO.0.PSM.A_transfac_format.txt
Homer format	ZBT26.H12INVIVO.0.PSM.A_homer_format_0.001.txt ZBT26.H12INVIVO.0.PSM.A_homer_format_0.0005.txt ZBT26.H12INVIVO.0.PSM.A_homer_format_0.0001.txt

PCM

	A	C	G	T
01	11.0	219.0	39.0	731.0
02	8.0	54.0	53.0	885.0
03	1.0	990.0	3.0	6.0
04	15.0	5.0	9.0	971.0
05	225.0	3.0	770.0	2.0
06	19.0	10.0	970.0	1.0
07	963.0	8.0	28.0	1.0
08	201.0	79.0	525.0	195.0
09	257.0	387.0	138.0	218.0

PFM

	A	C	G	T
01	0.011	0.219	0.039	0.731
02	0.008	0.054	0.053	0.885
03	0.001	0.99	0.003	0.006
04	0.015	0.005	0.009	0.971
05	0.225	0.003	0.77	0.002
06	0.019	0.01	0.97	0.001
07	0.963	0.008	0.028	0.001
08	0.201	0.079	0.525	0.195
09	0.257	0.387	0.138	0.218

PWM

	A	C	G	T
01	-2.985	-0.131	-1.821	1.068
02	-3.253	-1.508	-1.526	1.259
03	-4.525	1.371	-3.975	-3.484
04	-2.711	-3.622	-3.156	1.352
05	-0.105	-3.975	1.12	-4.213
06	-2.497	-3.066	1.351	-4.525
07	1.344	-3.253	-2.136	-4.525
08	-0.216	-1.137	0.738	-0.247
09	0.027	0.435	-0.589	-0.136

Standard thresholds

P-value	Threshold
0.001	4.36206
0.0005	5.28515
0.0001	7.61117