ZBT26.H12INVITRO.1.SM.B motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZBT26.H12INVITRO.1.SM.B
Gene (human)	ZBTB26 (GeneCards)
Gene synonyms (human)	KIAA1572, ZNF481
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	1
Quality	B

Motif length	23
Consensus	nnhdTTCTAGAWhnbWYYhdRdn
GC content	36.35%
Information content (bits; total / per base)	18.399 / 0.8
Data sources	HT-SELEX + Methyl-HT-SELEX
Aligned words	312

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (7)	0.754	0.808	0.627	0.742	0.66	0.755	2.039	2.798	35.328	38.886

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
Overall, 2 experiments	median	0.728	0.761	0.569	0.625	0.5	0.557
Overall, 2 experiments	best	0.914	0.907	0.681	0.72	0.554	0.614
Methyl HT-SELEX, 1 experiments	median	0.542	0.616	0.458	0.529	0.446	0.5
Methyl HT-SELEX, 1 experiments	best	0.542	0.616	0.458	0.529	0.446	0.5
Non-Methyl HT-SELEX, 1 experiments	median	0.914	0.907	0.681	0.72	0.554	0.614
Non-Methyl HT-SELEX, 1 experiments	best	0.914	0.907	0.681	0.72	0.554	0.614

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZBTB6-like {2.3.3.11} (TFClass)
TFClass ID	TFClass: 2.3.3.11.2
HGNC	HGNC:23383
MGI
EntrezGene (human)	GeneID:57684 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZBT26_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q9HCK0 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	1
Methyl-HT-SELEX	1

PCM	ZBT26.H12INVITRO.1.SM.B.pcm
PWM	ZBT26.H12INVITRO.1.SM.B.pwm
PFM	ZBT26.H12INVITRO.1.SM.B.pfm
Alignment	ZBT26.H12INVITRO.1.SM.B.words.tsv
Threshold to P-value map	ZBT26.H12INVITRO.1.SM.B.thr
Motif in other formats
JASPAR format	ZBT26.H12INVITRO.1.SM.B_jaspar_format.txt
MEME format	ZBT26.H12INVITRO.1.SM.B_meme_format.meme
Transfac format	ZBT26.H12INVITRO.1.SM.B_transfac_format.txt
Homer format	ZBT26.H12INVITRO.1.SM.B_homer_format_0.001.txt ZBT26.H12INVITRO.1.SM.B_homer_format_0.0005.txt ZBT26.H12INVITRO.1.SM.B_homer_format_0.0001.txt

PCM

	A	C	G	T
01	55.0	89.0	87.0	81.0
02	57.25	95.25	96.25	63.25
03	53.0	91.0	51.0	117.0
04	73.0	30.0	88.0	121.0
05	42.0	21.0	2.0	247.0
06	0.0	0.0	0.0	312.0
07	0.0	312.0	0.0	0.0
08	0.0	0.0	0.0	312.0
09	311.0	0.0	1.0	0.0
10	0.0	0.0	312.0	0.0
11	312.0	0.0	0.0	0.0
12	174.0	6.0	31.0	101.0
13	79.0	66.0	25.0	142.0
14	53.0	73.0	90.0	96.0
15	51.0	62.0	69.0	130.0
16	34.0	28.0	18.0	232.0
17	11.0	121.0	13.0	167.0
18	2.0	141.0	1.0	168.0
19	97.0	69.0	13.0	133.0
20	116.0	5.0	124.0	67.0
21	158.0	4.0	140.0	10.0
22	154.0	17.0	105.0	36.0
23	121.0	56.0	56.0	79.0

PFM

	A	C	G	T
01	0.176	0.285	0.279	0.26
02	0.183	0.305	0.308	0.203
03	0.17	0.292	0.163	0.375
04	0.234	0.096	0.282	0.388
05	0.135	0.067	0.006	0.792
06	0.0	0.0	0.0	1.0
07	0.0	1.0	0.0	0.0
08	0.0	0.0	0.0	1.0
09	0.997	0.0	0.003	0.0
10	0.0	0.0	1.0	0.0
11	1.0	0.0	0.0	0.0
12	0.558	0.019	0.099	0.324
13	0.253	0.212	0.08	0.455
14	0.17	0.234	0.288	0.308
15	0.163	0.199	0.221	0.417
16	0.109	0.09	0.058	0.744
17	0.035	0.388	0.042	0.535
18	0.006	0.452	0.003	0.538
19	0.311	0.221	0.042	0.426
20	0.372	0.016	0.397	0.215
21	0.506	0.013	0.449	0.032
22	0.494	0.054	0.337	0.115
23	0.388	0.179	0.179	0.253

PWM

	A	C	G	T
01	-0.342	0.13	0.107	0.037
02	-0.303	0.197	0.207	-0.205
03	-0.378	0.152	-0.415	0.399
04	-0.065	-0.927	0.119	0.433
05	-0.604	-1.264	-3.141	1.14
06	-4.013	-4.013	-4.013	1.373
07	-4.013	1.373	-4.013	-4.013
08	-4.013	-4.013	-4.013	1.373
09	1.369	-4.013	-3.485	-4.013
10	-4.013	-4.013	1.373	-4.013
11	1.373	-4.013	-4.013	-4.013
12	0.792	-2.369	-0.896	0.254
13	0.013	-0.164	-1.1	0.591
14	-0.378	-0.065	0.141	0.204
15	-0.415	-0.225	-0.12	0.504
16	-0.807	-0.993	-1.408	1.078
17	-1.854	0.433	-1.705	0.752
18	-3.141	0.584	-3.485	0.758
19	0.214	-0.12	-1.705	0.526
20	0.391	-2.513	0.457	-0.149
21	0.697	-2.682	0.577	-1.938
22	0.671	-1.461	0.293	-0.752
23	0.433	-0.324	-0.324	0.013

Standard thresholds

P-value	Threshold
0.001	0.82221
0.0005	2.28691
0.0001	5.36726