ZBT26.H12INVITRO.0.PSM.A motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZBT26.H12INVITRO.0.PSM.A
Gene (human)	ZBTB26 (GeneCards)
Gene synonyms (human)	KIAA1572, ZNF481
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	A

Motif length	11
Consensus	nbdTTCTAGMb
GC content	39.86%
Information content (bits; total / per base)	10.755 / 0.978
Data sources	ChIP-Seq + HT-SELEX + Methyl-HT-SELEX
Aligned words	9533

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (7)	0.741	0.789	0.637	0.75	0.727	0.789	2.497	3.221	72.921	90.229

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
Overall, 2 experiments	median	0.754	0.782	0.588	0.642	0.508	0.567
Overall, 2 experiments	best	0.951	0.938	0.711	0.748	0.569	0.631
Methyl HT-SELEX, 1 experiments	median	0.557	0.625	0.466	0.535	0.447	0.503
Methyl HT-SELEX, 1 experiments	best	0.557	0.625	0.466	0.535	0.447	0.503
Non-Methyl HT-SELEX, 1 experiments	median	0.951	0.938	0.711	0.748	0.569	0.631
Non-Methyl HT-SELEX, 1 experiments	best	0.951	0.938	0.711	0.748	0.569	0.631

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZBTB6-like {2.3.3.11} (TFClass)
TFClass ID	TFClass: 2.3.3.11.2
HGNC	HGNC:23383
MGI
EntrezGene (human)	GeneID:57684 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZBT26_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q9HCK0 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	1
Methyl-HT-SELEX	1

PCM	ZBT26.H12INVITRO.0.PSM.A.pcm
PWM	ZBT26.H12INVITRO.0.PSM.A.pwm
PFM	ZBT26.H12INVITRO.0.PSM.A.pfm
Alignment	ZBT26.H12INVITRO.0.PSM.A.words.tsv
Threshold to P-value map	ZBT26.H12INVITRO.0.PSM.A.thr
Motif in other formats
JASPAR format	ZBT26.H12INVITRO.0.PSM.A_jaspar_format.txt
MEME format	ZBT26.H12INVITRO.0.PSM.A_meme_format.meme
Transfac format	ZBT26.H12INVITRO.0.PSM.A_transfac_format.txt
Homer format	ZBT26.H12INVITRO.0.PSM.A_homer_format_0.001.txt ZBT26.H12INVITRO.0.PSM.A_homer_format_0.0005.txt ZBT26.H12INVITRO.0.PSM.A_homer_format_0.0001.txt

PCM

	A	C	G	T
01	1961.5	2709.5	2058.5	2803.5
02	1113.25	2880.25	1560.25	3979.25
03	1928.0	1283.0	2497.0	3825.0
04	935.0	594.0	120.0	7884.0
05	3.0	22.0	64.0	9444.0
06	0.0	9533.0	0.0	0.0
07	7.0	277.0	17.0	9232.0
08	6761.0	117.0	2644.0	11.0
09	61.0	228.0	9147.0	97.0
10	7228.0	906.0	725.0	674.0
11	1567.25	1669.25	2745.25	3551.25

PFM

	A	C	G	T
01	0.206	0.284	0.216	0.294
02	0.117	0.302	0.164	0.417
03	0.202	0.135	0.262	0.401
04	0.098	0.062	0.013	0.827
05	0.0	0.002	0.007	0.991
06	0.0	1.0	0.0	0.0
07	0.001	0.029	0.002	0.968
08	0.709	0.012	0.277	0.001
09	0.006	0.024	0.96	0.01
10	0.758	0.095	0.076	0.071
11	0.164	0.175	0.288	0.373

PWM

	A	C	G	T
01	-0.195	0.128	-0.146	0.162
02	-0.76	0.189	-0.423	0.512
03	-0.212	-0.618	0.047	0.473
04	-0.934	-1.386	-2.971	1.196
05	-6.111	-4.587	-3.583	1.376
06	-6.948	1.386	-6.948	-6.948
07	-5.548	-2.145	-4.818	1.353
08	1.042	-2.996	0.104	-5.19
09	-3.629	-2.338	1.344	-3.179
10	1.109	-0.966	-1.188	-1.261
11	-0.419	-0.356	0.141	0.399

Standard thresholds

P-value	Threshold
0.001	4.50739
0.0005	5.62513
0.0001	7.551115