ZBT24.H12INVITRO.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZBT24.H12INVITRO.0.P.D
Gene (human)	ZBTB24 (GeneCards)
Gene synonyms (human)	KIAA0441, ZNF450
Gene (mouse)	Zbtb24
Gene synonyms (mouse)	Bif1, Bsg1, Znf450
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	20
Consensus	hhbhbhbCWdYMAGGACCYb
GC content	54.47%
Information content (bits; total / per base)	15.01 / 0.75
Data sources	ChIP-Seq
Aligned words	1000

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	3 (21)	0.879	0.937	0.833	0.89	0.882	0.923	4.717	5.283	113.31	174.921
Mouse	2 (12)	0.866	0.903	0.809	0.842	0.891	0.932	5.428	6.231	27.283	32.824

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.55
HGNC	HGNC:21143
MGI	MGI:3039618
EntrezGene (human)	GeneID:9841 (SSTAR profile)
EntrezGene (mouse)	GeneID:268294 (SSTAR profile)
UniProt ID (human)	ZBT24_HUMAN
UniProt ID (mouse)	ZBT24_MOUSE
UniProt AC (human)	O43167 (TFClass)
UniProt AC (mouse)	Q80X44 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	3 human, 2 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZBT24.H12INVITRO.0.P.D.pcm
PWM	ZBT24.H12INVITRO.0.P.D.pwm
PFM	ZBT24.H12INVITRO.0.P.D.pfm
Alignment	ZBT24.H12INVITRO.0.P.D.words.tsv
Threshold to P-value map	ZBT24.H12INVITRO.0.P.D.thr
Motif in other formats
JASPAR format	ZBT24.H12INVITRO.0.P.D_jaspar_format.txt
MEME format	ZBT24.H12INVITRO.0.P.D_meme_format.meme
Transfac format	ZBT24.H12INVITRO.0.P.D_transfac_format.txt
Homer format	ZBT24.H12INVITRO.0.P.D_homer_format_0.001.txt ZBT24.H12INVITRO.0.P.D_homer_format_0.0005.txt ZBT24.H12INVITRO.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	183.0	349.0	113.0	355.0
02	271.0	200.0	127.0	402.0
03	92.0	324.0	206.0	378.0
04	205.0	207.0	134.0	454.0
05	159.0	355.0	164.0	322.0
06	406.0	358.0	96.0	140.0
07	96.0	432.0	234.0	238.0
08	7.0	937.0	19.0	37.0
09	179.0	54.0	26.0	741.0
10	110.0	54.0	380.0	456.0
11	91.0	659.0	90.0	160.0
12	182.0	725.0	31.0	62.0
13	920.0	8.0	52.0	20.0
14	57.0	5.0	916.0	22.0
15	14.0	15.0	964.0	7.0
16	852.0	11.0	66.0	71.0
17	22.0	933.0	11.0	34.0
18	34.0	870.0	8.0	88.0
19	24.0	196.0	49.0	731.0
20	123.0	154.0	361.0	362.0

PFM

	A	C	G	T
01	0.183	0.349	0.113	0.355
02	0.271	0.2	0.127	0.402
03	0.092	0.324	0.206	0.378
04	0.205	0.207	0.134	0.454
05	0.159	0.355	0.164	0.322
06	0.406	0.358	0.096	0.14
07	0.096	0.432	0.234	0.238
08	0.007	0.937	0.019	0.037
09	0.179	0.054	0.026	0.741
10	0.11	0.054	0.38	0.456
11	0.091	0.659	0.09	0.16
12	0.182	0.725	0.031	0.062
13	0.92	0.008	0.052	0.02
14	0.057	0.005	0.916	0.022
15	0.014	0.015	0.964	0.007
16	0.852	0.011	0.066	0.071
17	0.022	0.933	0.011	0.034
18	0.034	0.87	0.008	0.088
19	0.024	0.196	0.049	0.731
20	0.123	0.154	0.361	0.362

PWM

	A	C	G	T
01	-0.309	0.332	-0.786	0.349
02	0.08	-0.221	-0.671	0.472
03	-0.988	0.258	-0.192	0.411
04	-0.197	-0.187	-0.618	0.594
05	-0.449	0.349	-0.418	0.252
06	0.482	0.357	-0.946	-0.574
07	-0.946	0.544	-0.066	-0.049
08	-3.362	1.316	-2.497	-1.872
09	-0.331	-1.508	-2.206	1.082
10	-0.812	-1.508	0.416	0.598
11	-0.999	0.965	-1.01	-0.442
12	-0.315	1.06	-2.04	-1.374
13	1.298	-3.253	-1.544	-2.45
14	-1.455	-3.622	1.294	-2.362
15	-2.773	-2.711	1.345	-3.362
16	1.221	-2.985	-1.313	-1.242
17	-2.362	1.312	-2.985	-1.952
18	-1.952	1.242	-3.253	-1.032
19	-2.281	-0.241	-1.602	1.068
20	-0.702	-0.48	0.365	0.368

Standard thresholds

P-value	Threshold
0.001	3.20166
0.0005	4.28971
0.0001	6.58401