ZBT20.H12RSNP.0.SM.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZBT20.H12RSNP.0.SM.D
Gene (human)	ZBTB20 (GeneCards)
Gene synonyms (human)	DPZF, ZNF288
Gene (mouse)	Zbtb20
Gene synonyms (mouse)	Zfp288
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	14
Consensus	nbSTATACRTYvnn
GC content	38.95%
Information content (bits; total / per base)	12.732 / 0.909
Data sources	HT-SELEX + Methyl-HT-SELEX
Aligned words	9680

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
Overall, 2 experiments	median	0.994	0.99	0.989	0.983	0.97	0.96
Overall, 2 experiments	best	0.995	0.991	0.991	0.985	0.971	0.962
Methyl HT-SELEX, 1 experiments	median	0.993	0.988	0.988	0.981	0.97	0.959
Methyl HT-SELEX, 1 experiments	best	0.993	0.988	0.988	0.981	0.97	0.959
Non-Methyl HT-SELEX, 1 experiments	median	0.995	0.991	0.991	0.985	0.971	0.962
Non-Methyl HT-SELEX, 1 experiments	best	0.995	0.991	0.991	0.985	0.971	0.962

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZBTB20-like {2.3.3.14} (TFClass)
TFClass ID	TFClass: 2.3.3.14.1
HGNC	HGNC:13503
MGI	MGI:1929213
EntrezGene (human)	GeneID:26137 (SSTAR profile)
EntrezGene (mouse)	GeneID:56490 (SSTAR profile)
UniProt ID (human)	ZBT20_HUMAN
UniProt ID (mouse)	ZBT20_MOUSE
UniProt AC (human)	Q9HC78 (TFClass)
UniProt AC (mouse)	Q8K0L9 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	0 human, 0 mouse
HT-SELEX	1
Methyl-HT-SELEX	1

PCM	ZBT20.H12RSNP.0.SM.D.pcm
PWM	ZBT20.H12RSNP.0.SM.D.pwm
PFM	ZBT20.H12RSNP.0.SM.D.pfm
Alignment	ZBT20.H12RSNP.0.SM.D.words.tsv
Threshold to P-value map	ZBT20.H12RSNP.0.SM.D.thr
Motif in other formats
JASPAR format	ZBT20.H12RSNP.0.SM.D_jaspar_format.txt
MEME format	ZBT20.H12RSNP.0.SM.D_meme_format.meme
Transfac format	ZBT20.H12RSNP.0.SM.D_transfac_format.txt
Homer format	ZBT20.H12RSNP.0.SM.D_homer_format_0.001.txt ZBT20.H12RSNP.0.SM.D_homer_format_0.0005.txt ZBT20.H12RSNP.0.SM.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	3071.5	1970.5	1969.5	2668.5
02	655.0	3401.0	1843.0	3781.0
03	1433.0	6649.0	1573.0	25.0
04	5.0	2514.0	8.0	7153.0
05	9251.0	4.0	79.0	346.0
06	7.0	0.0	0.0	9673.0
07	9671.0	0.0	9.0	0.0
08	1.0	7571.0	2058.0	50.0
09	4336.0	72.0	5272.0	0.0
10	157.0	37.0	25.0	9461.0
11	913.0	2136.0	176.0	6455.0
12	2910.0	2023.0	3427.0	1320.0
13	3567.5	2618.5	1907.5	1586.5
14	2570.25	2330.25	3117.25	1662.25

PFM

	A	C	G	T
01	0.317	0.204	0.203	0.276
02	0.068	0.351	0.19	0.391
03	0.148	0.687	0.163	0.003
04	0.001	0.26	0.001	0.739
05	0.956	0.0	0.008	0.036
06	0.001	0.0	0.0	0.999
07	0.999	0.0	0.001	0.0
08	0.0	0.782	0.213	0.005
09	0.448	0.007	0.545	0.0
10	0.016	0.004	0.003	0.977
11	0.094	0.221	0.018	0.667
12	0.301	0.209	0.354	0.136
13	0.369	0.271	0.197	0.164
14	0.266	0.241	0.322	0.172

PWM

	A	C	G	T
01	0.238	-0.205	-0.206	0.098
02	-1.304	0.34	-0.272	0.446
03	-0.523	1.01	-0.43	-4.486
04	-5.805	0.038	-5.461	1.083
05	1.34	-5.953	-3.394	-1.939
06	-5.563	-6.962	-6.962	1.385
07	1.385	-6.962	-5.368	-6.962
08	-6.6	1.14	-0.162	-3.836
09	0.583	-3.484	0.778	-6.962
10	-2.722	-4.121	-4.486	1.363
11	-0.973	-0.125	-2.609	0.98
12	0.184	-0.179	0.348	-0.605
13	0.388	0.079	-0.238	-0.422
14	0.06	-0.038	0.253	-0.375

Standard thresholds

P-value	Threshold
0.001	2.99726
0.0005	4.42096
0.0001	7.458965