MotifZBT18.H12INVITRO.0.PSM.A
Gene (human)ZBTB18
(GeneCards)
Gene synonyms (human)RP58, TAZ1, ZNF238
Gene (mouse)Zbtb18
Gene synonyms (mouse)Rp58, Zfp238, Znf238
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
A
Motif length11
ConsensusbSCAGhTGYKb
GC content55.87%
Information content (bits; total / per base)10.85 / 0.986
Data sourcesChIP-Seq + HT-SELEX + Methyl-HT-SELEX
Aligned words500

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 1 (5) 0.825 0.837 0.761 0.779 0.81 0.814 2.946 3.02 231.886 241.056

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 6 experiments median 0.992 0.99 0.898 0.906 0.763 0.79
best 1.0 0.999 0.998 0.997 0.971 0.971
Methyl HT-SELEX, 1 experiments median 0.999 0.998 0.998 0.997 0.971 0.971
best 0.999 0.998 0.998 0.997 0.971 0.971
Non-Methyl HT-SELEX, 5 experiments median 0.985 0.982 0.802 0.818 0.656 0.692
best 1.0 0.999 0.998 0.997 0.888 0.9
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classC2H2 zinc finger factors {2.3} (TFClass)
TF familyMore than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamilyZNF238-like {2.3.3.16} (TFClass)
TFClass IDTFClass: 2.3.3.16.1
HGNCHGNC:13030
MGIMGI:1353609
EntrezGene (human)GeneID:10472
(SSTAR profile)
EntrezGene (mouse)GeneID:30928
(SSTAR profile)
UniProt ID (human)ZBT18_HUMAN
UniProt ID (mouse)ZBT18_MOUSE
UniProt AC (human)Q99592
(TFClass)
UniProt AC (mouse)Q9WUK6
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 1 human, 0 mouse
HT-SELEX 5
Methyl-HT-SELEX 1
PCM
ACGT
0137.072.0140.0251.0
0258.0368.072.02.0
034.0492.01.03.0
04486.06.03.05.0
052.07.0433.058.0
06224.0184.015.077.0
072.05.054.0439.0
081.012.0474.013.0
0961.0134.06.0299.0
1030.025.0225.0220.0
1145.0133.0212.0110.0
PFM
ACGT
010.0740.1440.280.502
020.1160.7360.1440.004
030.0080.9840.0020.006
040.9720.0120.0060.01
050.0040.0140.8660.116
060.4480.3680.030.154
070.0040.010.1080.878
080.0020.0240.9480.026
090.1220.2680.0120.598
100.060.050.450.44
110.090.2660.4240.22
PWM
ACGT
01-1.189-0.5430.1120.691
02-0.7541.072-0.543-3.573
03-3.1261.361-3.903-3.325
041.349-2.819-3.325-2.961
05-3.573-2.6941.234-0.754
060.5780.383-2.034-0.477
07-3.573-2.961-0.8231.247
08-3.903-2.2341.324-2.163
09-0.7050.069-2.8190.865
10-1.389-1.5610.5820.56
11-1.00.0610.523-0.126
Standard thresholds
P-value Threshold
0.001 4.53868
0.0005 5.48269
0.0001 7.413635