ZBT17.H12INVITRO.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZBT17.H12INVITRO.0.P.D
Gene (human)	ZBTB17 (GeneCards)
Gene synonyms (human)	MIZ1, ZNF151, ZNF60
Gene (mouse)	Zbtb17
Gene synonyms (mouse)	Zfp100, Znf151
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	18
Consensus	vdRhGKGGGMKGRRvnvv
GC content	66.21%
Information content (bits; total / per base)	10.292 / 0.572
Data sources	ChIP-Seq
Aligned words	998

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	6 (32)	0.679	0.721	0.536	0.608	0.732	0.777	2.885	3.433	39.491	80.77
Mouse	3 (21)	0.716	0.756	0.565	0.626	0.799	0.85	3.639	4.474	51.004	113.699

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	Multiple dispersed zinc fingers {2.3.4} (TFClass)
TF subfamily	Unclassified {2.3.4.0} (TFClass)
TFClass ID	TFClass: 2.3.4.0.72
HGNC	HGNC:12936
MGI	MGI:107410
EntrezGene (human)	GeneID:7709 (SSTAR profile)
EntrezGene (mouse)	GeneID:22642 (SSTAR profile)
UniProt ID (human)	ZBT17_HUMAN
UniProt ID (mouse)	ZBT17_MOUSE
UniProt AC (human)	Q13105 (TFClass)
UniProt AC (mouse)	Q60821 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	6 human, 3 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZBT17.H12INVITRO.0.P.D.pcm
PWM	ZBT17.H12INVITRO.0.P.D.pwm
PFM	ZBT17.H12INVITRO.0.P.D.pfm
Alignment	ZBT17.H12INVITRO.0.P.D.words.tsv
Threshold to P-value map	ZBT17.H12INVITRO.0.P.D.thr
Motif in other formats
JASPAR format	ZBT17.H12INVITRO.0.P.D_jaspar_format.txt
MEME format	ZBT17.H12INVITRO.0.P.D_meme_format.meme
Transfac format	ZBT17.H12INVITRO.0.P.D_transfac_format.txt
Homer format	ZBT17.H12INVITRO.0.P.D_homer_format_0.001.txt ZBT17.H12INVITRO.0.P.D_homer_format_0.0005.txt ZBT17.H12INVITRO.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	260.0	208.0	381.0	149.0
02	191.0	153.0	448.0	206.0
03	155.0	120.0	652.0	71.0
04	265.0	299.0	33.0	401.0
05	125.0	41.0	806.0	26.0
06	140.0	5.0	575.0	278.0
07	119.0	14.0	835.0	30.0
08	30.0	16.0	891.0	61.0
09	98.0	36.0	856.0	8.0
10	434.0	374.0	7.0	183.0
11	144.0	10.0	618.0	226.0
12	39.0	20.0	856.0	83.0
13	249.0	86.0	597.0	66.0
14	292.0	56.0	592.0	58.0
15	352.0	315.0	231.0	100.0
16	257.0	151.0	314.0	276.0
17	216.0	240.0	455.0	87.0
18	271.0	224.0	379.0	124.0

PFM

	A	C	G	T
01	0.261	0.208	0.382	0.149
02	0.191	0.153	0.449	0.206
03	0.155	0.12	0.653	0.071
04	0.266	0.3	0.033	0.402
05	0.125	0.041	0.808	0.026
06	0.14	0.005	0.576	0.279
07	0.119	0.014	0.837	0.03
08	0.03	0.016	0.893	0.061
09	0.098	0.036	0.858	0.008
10	0.435	0.375	0.007	0.183
11	0.144	0.01	0.619	0.226
12	0.039	0.02	0.858	0.083
13	0.249	0.086	0.598	0.066
14	0.293	0.056	0.593	0.058
15	0.353	0.316	0.231	0.1
16	0.258	0.151	0.315	0.277
17	0.216	0.24	0.456	0.087
18	0.272	0.224	0.38	0.124

PWM

	A	C	G	T
01	0.041	-0.181	0.421	-0.511
02	-0.265	-0.485	0.582	-0.19
03	-0.472	-0.725	0.956	-1.24
04	0.06	0.18	-1.979	0.472
05	-0.684	-1.772	1.168	-2.204
06	-0.572	-3.62	0.831	0.107
07	-0.733	-2.771	1.203	-2.069
08	-2.069	-2.651	1.268	-1.388
09	-0.924	-1.896	1.228	-3.252
10	0.551	0.403	-3.36	-0.307
11	-0.545	-3.065	0.903	-0.098
12	-1.819	-2.448	1.228	-1.087
13	-0.002	-1.052	0.868	-1.311
14	0.156	-1.471	0.86	-1.437
15	0.342	0.232	-0.076	-0.904
16	0.029	-0.498	0.229	0.1
17	-0.143	-0.039	0.598	-1.041
18	0.082	-0.107	0.416	-0.692

Standard thresholds

P-value	Threshold
0.001	4.64731
0.0005	5.47076
0.0001	7.17796