ZBT14.H12INVIVO.0.P.C motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZBT14.H12INVIVO.0.P.C
Gene (human)	ZBTB14 (GeneCards)
Gene synonyms (human)	ZFP161, ZNF478
Gene (mouse)	Zbtb14
Gene synonyms (mouse)	Zfp-5, Zfp161, Zfp5
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	C

Motif length	17
Consensus	ShSnSWGCGCGYGSSbS
GC content	81.04%
Information content (bits; total / per base)	14.738 / 0.867
Data sources	ChIP-Seq
Aligned words	986

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (5)	0.892	0.918	0.808	0.844	0.791	0.814	2.69	2.847	108.886	166.959

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
Non-Methyl HT-SELEX, 2 experiments	median	0.794	0.773	0.664	0.665	0.582	0.598
Non-Methyl HT-SELEX, 2 experiments	best	0.912	0.893	0.73	0.739	0.611	0.64

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.1
HGNC	HGNC:12860
MGI	MGI:1195345
EntrezGene (human)	GeneID:7541 (SSTAR profile)
EntrezGene (mouse)	GeneID:22666 (SSTAR profile)
UniProt ID (human)	ZBT14_HUMAN
UniProt ID (mouse)	ZBT14_MOUSE
UniProt AC (human)	O43829 (TFClass)
UniProt AC (mouse)	Q08376 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	2
Methyl-HT-SELEX	0

PCM	ZBT14.H12INVIVO.0.P.C.pcm
PWM	ZBT14.H12INVIVO.0.P.C.pwm
PFM	ZBT14.H12INVIVO.0.P.C.pfm
Alignment	ZBT14.H12INVIVO.0.P.C.words.tsv
Threshold to P-value map	ZBT14.H12INVIVO.0.P.C.thr
Motif in other formats
JASPAR format	ZBT14.H12INVIVO.0.P.C_jaspar_format.txt
MEME format	ZBT14.H12INVIVO.0.P.C_meme_format.meme
Transfac format	ZBT14.H12INVIVO.0.P.C_transfac_format.txt
Homer format	ZBT14.H12INVIVO.0.P.C_homer_format_0.001.txt ZBT14.H12INVIVO.0.P.C_homer_format_0.0005.txt ZBT14.H12INVIVO.0.P.C_homer_format_0.0001.txt

PCM

	A	C	G	T
01	39.0	236.0	648.0	63.0
02	190.0	482.0	138.0	176.0
03	82.0	104.0	747.0	53.0
04	160.0	348.0	255.0	223.0
05	32.0	219.0	712.0	23.0
06	251.0	2.0	99.0	634.0
07	8.0	45.0	910.0	23.0
08	81.0	887.0	10.0	8.0
09	26.0	35.0	913.0	12.0
10	49.0	896.0	3.0	38.0
11	50.0	14.0	919.0	3.0
12	33.0	719.0	88.0	146.0
13	17.0	70.0	807.0	92.0
14	56.0	586.0	228.0	116.0
15	69.0	401.0	498.0	18.0
16	62.0	572.0	160.0	192.0
17	67.0	208.0	625.0	86.0

PFM

	A	C	G	T
01	0.04	0.239	0.657	0.064
02	0.193	0.489	0.14	0.178
03	0.083	0.105	0.758	0.054
04	0.162	0.353	0.259	0.226
05	0.032	0.222	0.722	0.023
06	0.255	0.002	0.1	0.643
07	0.008	0.046	0.923	0.023
08	0.082	0.9	0.01	0.008
09	0.026	0.035	0.926	0.012
10	0.05	0.909	0.003	0.039
11	0.051	0.014	0.932	0.003
12	0.033	0.729	0.089	0.148
13	0.017	0.071	0.818	0.093
14	0.057	0.594	0.231	0.118
15	0.07	0.407	0.505	0.018
16	0.063	0.58	0.162	0.195
17	0.068	0.211	0.634	0.087

PWM

	A	C	G	T
01	-1.808	-0.043	0.962	-1.344
02	-0.258	0.667	-0.575	-0.334
03	-1.087	-0.854	1.104	-1.512
04	-0.428	0.343	0.034	-0.099
05	-1.996	-0.117	1.056	-2.307
06	0.018	-4.2	-0.902	0.94
07	-3.24	-1.67	1.301	-2.307
08	-1.099	1.275	-3.053	-3.24
09	-2.192	-1.911	1.304	-2.895
10	-1.588	1.286	-3.962	-1.832
11	-1.568	-2.759	1.311	-3.962
12	-1.967	1.066	-1.018	-0.519
13	-2.585	-1.242	1.181	-0.974
14	-1.459	0.862	-0.077	-0.746
15	-1.256	0.484	0.7	-2.533
16	-1.36	0.838	-0.428	-0.248
17	-1.284	-0.169	0.926	-1.04

Standard thresholds

P-value	Threshold
0.001	3.35401
0.0005	4.41796
0.0001	6.65631