ZBT14.H12INVITRO.0.P.C motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZBT14.H12INVITRO.0.P.C
Gene (human)	ZBTB14 (GeneCards)
Gene synonyms (human)	ZFP161, ZNF478
Gene (mouse)	Zbtb14
Gene synonyms (mouse)	Zfp-5, Zfp161, Zfp5
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	C

Motif length	13
Consensus	GMGbSWGCGCGSK
GC content	82.16%
Information content (bits; total / per base)	13.725 / 1.056
Data sources	ChIP-Seq
Aligned words	973

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (5)	0.889	0.917	0.789	0.832	0.786	0.803	2.542	2.635	105.31	154.155

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
Non-Methyl HT-SELEX, 2 experiments	median	0.81	0.793	0.682	0.681	0.598	0.611
Non-Methyl HT-SELEX, 2 experiments	best	0.929	0.914	0.754	0.76	0.631	0.657

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.1
HGNC	HGNC:12860
MGI	MGI:1195345
EntrezGene (human)	GeneID:7541 (SSTAR profile)
EntrezGene (mouse)	GeneID:22666 (SSTAR profile)
UniProt ID (human)	ZBT14_HUMAN
UniProt ID (mouse)	ZBT14_MOUSE
UniProt AC (human)	O43829 (TFClass)
UniProt AC (mouse)	Q08376 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	2
Methyl-HT-SELEX	0

PCM	ZBT14.H12INVITRO.0.P.C.pcm
PWM	ZBT14.H12INVITRO.0.P.C.pwm
PFM	ZBT14.H12INVITRO.0.P.C.pfm
Alignment	ZBT14.H12INVITRO.0.P.C.words.tsv
Threshold to P-value map	ZBT14.H12INVITRO.0.P.C.thr
Motif in other formats
JASPAR format	ZBT14.H12INVITRO.0.P.C_jaspar_format.txt
MEME format	ZBT14.H12INVITRO.0.P.C_meme_format.meme
Transfac format	ZBT14.H12INVITRO.0.P.C_transfac_format.txt
Homer format	ZBT14.H12INVITRO.0.P.C_homer_format_0.001.txt ZBT14.H12INVITRO.0.P.C_homer_format_0.0005.txt ZBT14.H12INVITRO.0.P.C_homer_format_0.0001.txt

PCM

	A	C	G	T
01	23.0	137.0	774.0	39.0
02	179.0	606.0	54.0	134.0
03	73.0	7.0	859.0	34.0
04	95.0	422.0	278.0	178.0
05	28.0	208.0	725.0	12.0
06	246.0	16.0	128.0	583.0
07	12.0	19.0	914.0	28.0
08	30.0	932.0	8.0	3.0
09	36.0	19.0	902.0	16.0
10	67.0	870.0	5.0	31.0
11	68.0	8.0	891.0	6.0
12	40.0	648.0	164.0	121.0
13	72.0	67.0	731.0	103.0

PFM

	A	C	G	T
01	0.024	0.141	0.795	0.04
02	0.184	0.623	0.055	0.138
03	0.075	0.007	0.883	0.035
04	0.098	0.434	0.286	0.183
05	0.029	0.214	0.745	0.012
06	0.253	0.016	0.132	0.599
07	0.012	0.02	0.939	0.029
08	0.031	0.958	0.008	0.003
09	0.037	0.02	0.927	0.016
10	0.069	0.894	0.005	0.032
11	0.07	0.008	0.916	0.006
12	0.041	0.666	0.169	0.124
13	0.074	0.069	0.751	0.106

PWM

	A	C	G	T
01	-2.294	-0.569	1.153	-1.794
02	-0.304	0.909	-1.481	-0.591
03	-1.187	-3.336	1.257	-1.925
04	-0.929	0.548	0.133	-0.31
05	-2.109	-0.155	1.087	-2.882
06	0.011	-2.626	-0.636	0.87
07	-2.882	-2.47	1.319	-2.109
08	-2.044	1.338	-3.227	-3.949
09	-1.871	-2.47	1.305	-2.626
10	-1.271	1.269	-3.596	-2.013
11	-1.257	-3.227	1.293	-3.457
12	-1.77	0.975	-0.391	-0.691
13	-1.201	-1.271	1.096	-0.85

Standard thresholds

P-value	Threshold
0.001	3.62681
0.0005	4.66906
0.0001	6.857015