ZBED5.H12RSNP.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZBED5.H12RSNP.0.P.D
Gene (human)	ZBED5 (GeneCards)
Gene synonyms (human)	Buster1
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	14
Consensus	bbbSRGMAMCvbbv
GC content	60.29%
Information content (bits; total / per base)	9.631 / 0.688
Data sources	ChIP-Seq
Aligned words	1000

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (6)	0.773	0.798	0.657	0.685	0.714	0.74	2.246	2.435	114.682	159.62

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	BED zinc finger {2.3.5} (TFClass)
TF subfamily	{2.3.5.0} (TFClass)
TFClass ID	TFClass: 2.3.5.0.5
HGNC	HGNC:30803
MGI
EntrezGene (human)	GeneID:58486 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZBED5_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q49AG3 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	no

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZBED5.H12RSNP.0.P.D.pcm
PWM	ZBED5.H12RSNP.0.P.D.pwm
PFM	ZBED5.H12RSNP.0.P.D.pfm
Alignment	ZBED5.H12RSNP.0.P.D.words.tsv
Threshold to P-value map	ZBED5.H12RSNP.0.P.D.thr
Motif in other formats
JASPAR format	ZBED5.H12RSNP.0.P.D_jaspar_format.txt
MEME format	ZBED5.H12RSNP.0.P.D_meme_format.meme
Transfac format	ZBED5.H12RSNP.0.P.D_transfac_format.txt
Homer format	ZBED5.H12RSNP.0.P.D_homer_format_0.001.txt ZBED5.H12RSNP.0.P.D_homer_format_0.0005.txt ZBED5.H12RSNP.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	60.25	358.25	141.25	440.25
02	54.25	335.25	108.25	502.25
03	89.25	167.25	245.25	498.25
04	34.25	428.25	520.25	17.25
05	479.25	13.25	492.25	15.25
06	26.25	11.25	955.25	7.25
07	687.25	252.25	54.25	6.25
08	982.25	5.25	10.25	2.25
09	150.0	704.0	132.0	14.0
10	54.0	848.0	13.0	85.0
11	312.0	368.0	224.0	96.0
12	102.0	492.0	195.0	211.0
13	153.0	175.0	419.0	253.0
14	146.0	230.0	542.0	82.0

PFM

	A	C	G	T
01	0.06	0.358	0.141	0.44
02	0.054	0.335	0.108	0.502
03	0.089	0.167	0.245	0.498
04	0.034	0.428	0.52	0.017
05	0.479	0.013	0.492	0.015
06	0.026	0.011	0.955	0.007
07	0.687	0.252	0.054	0.006
08	0.982	0.005	0.01	0.002
09	0.15	0.704	0.132	0.014
10	0.054	0.848	0.013	0.085
11	0.312	0.368	0.224	0.096
12	0.102	0.492	0.195	0.211
13	0.153	0.175	0.419	0.253
14	0.146	0.23	0.542	0.082

PWM

	A	C	G	T
01	-1.402	0.358	-0.566	0.563
02	-1.503	0.292	-0.828	0.694
03	-1.018	-0.399	-0.019	0.686
04	-1.945	0.535	0.729	-2.585
05	0.647	-2.822	0.674	-2.696
06	-2.197	-2.965	1.335	-3.334
07	1.007	0.009	-1.503	-3.452
08	1.363	-3.586	-3.045	-4.148
09	-0.506	1.031	-0.633	-2.773
10	-1.508	1.217	-2.839	-1.066
11	0.22	0.384	-0.109	-0.946
12	-0.887	0.674	-0.247	-0.168
13	-0.487	-0.354	0.514	0.012
14	-0.533	-0.083	0.77	-1.101

Standard thresholds

P-value	Threshold
0.001	4.85281
0.0005	5.68361
0.0001	7.31806