MotifZBED1.H12INVIVO.0.S.D
Gene (human)ZBED1
(GeneCards)
Gene synonyms (human)ALTE, DREF, hDREF, KIAA0785, TRAMP
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
D
Motif length14
ConsensusnWRTCGCGACAYdn
GC content48.94%
Information content (bits; total / per base)16.918 / 1.208
Data sourcesHT-SELEX
Aligned words5884

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Non-Methyl HT-SELEX, 3 experiments median 0.909 0.916 0.691 0.726 0.585 0.627
best 0.999 0.998 0.873 0.88 0.716 0.743
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classC2H2 zinc finger factors {2.3} (TFClass)
TF familyBED zinc finger {2.3.5} (TFClass)
TF subfamily {2.3.5.0} (TFClass)
TFClass IDTFClass: 2.3.5.0.1
HGNCHGNC:447
MGI
EntrezGene (human)GeneID:9189
(SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)ZBED1_HUMAN
UniProt ID (mouse)
UniProt AC (human)O96006
(TFClass)
UniProt AC (mouse)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 0 mouse
HT-SELEX 3
Methyl-HT-SELEX 0
PCM
ACGT
011585.751924.751440.75932.75
02645.0202.0333.04704.0
033361.063.02413.047.0
0464.092.058.05670.0
0544.05745.034.061.0
06286.022.05572.04.0
071.05787.023.073.0
088.01.05875.00.0
095874.04.06.00.0
106.03645.08.02225.0
115785.020.016.063.0
12162.0653.0561.04508.0
132571.5774.51728.5809.5
141532.751906.751407.751036.75
PFM
ACGT
010.270.3270.2450.159
020.110.0340.0570.799
030.5710.0110.410.008
040.0110.0160.010.964
050.0070.9760.0060.01
060.0490.0040.9470.001
070.00.9840.0040.012
080.0010.00.9980.0
090.9980.0010.0010.0
100.0010.6190.0010.378
110.9830.0030.0030.011
120.0280.1110.0950.766
130.4370.1320.2940.138
140.260.3240.2390.176
PWM
ACGT
010.0750.269-0.021-0.455
02-0.823-1.976-1.4811.161
030.825-3.1180.494-3.4
04-3.103-2.75-3.1981.348
05-3.4631.361-3.707-3.149
06-1.632-4.111.331-5.475
07-6.1411.369-4.07-2.975
08-4.976-6.1411.384-6.52
091.383-5.475-5.195-6.52
10-5.1950.907-4.9760.413
111.368-4.196-4.395-3.118
12-2.194-0.81-0.9621.119
130.558-0.640.161-0.596
140.0410.259-0.044-0.349
Standard thresholds
P-value Threshold
0.001 0.47141
0.0005 2.05366
0.0001 5.365815