ZBED1.H12INVIVO.0.S.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZBED1.H12INVIVO.0.S.D
Gene (human)	ZBED1 (GeneCards)
Gene synonyms (human)	ALTE, DREF, hDREF, KIAA0785, TRAMP
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	14
Consensus	nWRTCGCGACAYdn
GC content	48.94%
Information content (bits; total / per base)	16.918 / 1.208
Data sources	HT-SELEX
Aligned words	5884

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
Non-Methyl HT-SELEX, 3 experiments	median	0.909	0.916	0.691	0.726	0.585	0.627
Non-Methyl HT-SELEX, 3 experiments	best	0.999	0.998	0.873	0.88	0.716	0.743

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	BED zinc finger {2.3.5} (TFClass)
TF subfamily	{2.3.5.0} (TFClass)
TFClass ID	TFClass: 2.3.5.0.1
HGNC	HGNC:447
MGI
EntrezGene (human)	GeneID:9189 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZBED1_HUMAN
UniProt ID (mouse)
UniProt AC (human)	O96006 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	0 human, 0 mouse
HT-SELEX	3
Methyl-HT-SELEX	0

PCM	ZBED1.H12INVIVO.0.S.D.pcm
PWM	ZBED1.H12INVIVO.0.S.D.pwm
PFM	ZBED1.H12INVIVO.0.S.D.pfm
Alignment	ZBED1.H12INVIVO.0.S.D.words.tsv
Threshold to P-value map	ZBED1.H12INVIVO.0.S.D.thr
Motif in other formats
JASPAR format	ZBED1.H12INVIVO.0.S.D_jaspar_format.txt
MEME format	ZBED1.H12INVIVO.0.S.D_meme_format.meme
Transfac format	ZBED1.H12INVIVO.0.S.D_transfac_format.txt
Homer format	ZBED1.H12INVIVO.0.S.D_homer_format_0.001.txt ZBED1.H12INVIVO.0.S.D_homer_format_0.0005.txt ZBED1.H12INVIVO.0.S.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	1585.75	1924.75	1440.75	932.75
02	645.0	202.0	333.0	4704.0
03	3361.0	63.0	2413.0	47.0
04	64.0	92.0	58.0	5670.0
05	44.0	5745.0	34.0	61.0
06	286.0	22.0	5572.0	4.0
07	1.0	5787.0	23.0	73.0
08	8.0	1.0	5875.0	0.0
09	5874.0	4.0	6.0	0.0
10	6.0	3645.0	8.0	2225.0
11	5785.0	20.0	16.0	63.0
12	162.0	653.0	561.0	4508.0
13	2571.5	774.5	1728.5	809.5
14	1532.75	1906.75	1407.75	1036.75

PFM

	A	C	G	T
01	0.27	0.327	0.245	0.159
02	0.11	0.034	0.057	0.799
03	0.571	0.011	0.41	0.008
04	0.011	0.016	0.01	0.964
05	0.007	0.976	0.006	0.01
06	0.049	0.004	0.947	0.001
07	0.0	0.984	0.004	0.012
08	0.001	0.0	0.998	0.0
09	0.998	0.001	0.001	0.0
10	0.001	0.619	0.001	0.378
11	0.983	0.003	0.003	0.011
12	0.028	0.111	0.095	0.766
13	0.437	0.132	0.294	0.138
14	0.26	0.324	0.239	0.176

PWM

	A	C	G	T
01	0.075	0.269	-0.021	-0.455
02	-0.823	-1.976	-1.481	1.161
03	0.825	-3.118	0.494	-3.4
04	-3.103	-2.75	-3.198	1.348
05	-3.463	1.361	-3.707	-3.149
06	-1.632	-4.11	1.331	-5.475
07	-6.141	1.369	-4.07	-2.975
08	-4.976	-6.141	1.384	-6.52
09	1.383	-5.475	-5.195	-6.52
10	-5.195	0.907	-4.976	0.413
11	1.368	-4.196	-4.395	-3.118
12	-2.194	-0.81	-0.962	1.119
13	0.558	-0.64	0.161	-0.596
14	0.041	0.259	-0.044	-0.349

Standard thresholds

P-value	Threshold
0.001	0.47141
0.0005	2.05366
0.0001	5.365815