Z780A.H12INVITRO.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	Z780A.H12INVITRO.0.P.D
Gene (human)	ZNF780A (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	22
Consensus	dbdGGCAGGYdGbbddGShRGb
GC content	63.66%
Information content (bits; total / per base)	16.723 / 0.76
Data sources	ChIP-Seq
Aligned words	957

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (2)	0.925	0.927	0.881	0.884	0.921	0.922	6.431	6.505	497.631	505.377

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF283-like {2.3.3.67} (TFClass)
TFClass ID	TFClass: 2.3.3.67.11
HGNC	HGNC:27603
MGI
EntrezGene (human)	GeneID:284323 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	Z780A_HUMAN
UniProt ID (mouse)
UniProt AC (human)	O75290 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	Z780A.H12INVITRO.0.P.D.pcm
PWM	Z780A.H12INVITRO.0.P.D.pwm
PFM	Z780A.H12INVITRO.0.P.D.pfm
Alignment	Z780A.H12INVITRO.0.P.D.words.tsv
Threshold to P-value map	Z780A.H12INVITRO.0.P.D.thr
Motif in other formats
JASPAR format	Z780A.H12INVITRO.0.P.D_jaspar_format.txt
MEME format	Z780A.H12INVITRO.0.P.D_meme_format.meme
Transfac format	Z780A.H12INVITRO.0.P.D_transfac_format.txt
Homer format	Z780A.H12INVITRO.0.P.D_homer_format_0.001.txt Z780A.H12INVITRO.0.P.D_homer_format_0.0005.txt Z780A.H12INVITRO.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	192.0	124.0	326.0	315.0
02	133.0	411.0	140.0	273.0
03	515.0	71.0	135.0	236.0
04	62.0	19.0	851.0	25.0
05	25.0	39.0	866.0	27.0
06	71.0	856.0	17.0	13.0
07	938.0	1.0	12.0	6.0
08	10.0	2.0	933.0	12.0
09	19.0	114.0	796.0	28.0
10	122.0	581.0	82.0	172.0
11	491.0	61.0	285.0	120.0
12	37.0	70.0	772.0	78.0
13	76.0	110.0	282.0	489.0
14	78.0	301.0	108.0	470.0
15	411.0	108.0	121.0	317.0
16	192.0	95.0	513.0	157.0
17	106.0	44.0	784.0	23.0
18	46.0	255.0	632.0	24.0
19	413.0	369.0	58.0	117.0
20	479.0	36.0	416.0	26.0
21	81.0	30.0	797.0	49.0
22	76.0	338.0	443.0	100.0

PFM

	A	C	G	T
01	0.201	0.13	0.341	0.329
02	0.139	0.429	0.146	0.285
03	0.538	0.074	0.141	0.247
04	0.065	0.02	0.889	0.026
05	0.026	0.041	0.905	0.028
06	0.074	0.894	0.018	0.014
07	0.98	0.001	0.013	0.006
08	0.01	0.002	0.975	0.013
09	0.02	0.119	0.832	0.029
10	0.127	0.607	0.086	0.18
11	0.513	0.064	0.298	0.125
12	0.039	0.073	0.807	0.082
13	0.079	0.115	0.295	0.511
14	0.082	0.315	0.113	0.491
15	0.429	0.113	0.126	0.331
16	0.201	0.099	0.536	0.164
17	0.111	0.046	0.819	0.024
18	0.048	0.266	0.66	0.025
19	0.432	0.386	0.061	0.122
20	0.501	0.038	0.435	0.027
21	0.085	0.031	0.833	0.051
22	0.079	0.353	0.463	0.104

PWM

	A	C	G	T
01	-0.218	-0.651	0.307	0.273
02	-0.581	0.538	-0.531	0.131
03	0.763	-1.198	-0.567	-0.014
04	-1.33	-2.454	1.264	-2.199
05	-2.199	-1.778	1.281	-2.127
06	-1.198	1.27	-2.555	-2.796
07	1.361	-4.486	-2.866	-3.441
08	-3.024	-4.172	1.356	-2.866
09	-2.454	-0.734	1.197	-2.093
10	-0.667	0.883	-1.057	-0.327
11	0.715	-1.346	0.174	-0.683
12	-1.828	-1.212	1.167	-1.106
13	-1.132	-0.769	0.163	0.711
14	-1.106	0.228	-0.787	0.672
15	0.538	-0.787	-0.675	0.28
16	-0.218	-0.913	0.759	-0.418
17	-0.805	-1.662	1.182	-2.277
18	-1.619	0.063	0.967	-2.238
19	0.543	0.431	-1.395	-0.708
20	0.691	-1.855	0.55	-2.163
21	-1.069	-2.028	1.198	-1.558
22	-1.132	0.343	0.613	-0.862

Standard thresholds

P-value	Threshold
0.001	2.61161
0.0005	3.76046
0.0001	6.18951