Z705G.H12INVITRO.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	Z705G.H12INVITRO.0.P.D
Gene (human)	ZNF705G (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	22
Consensus	bWdhnGAKGWTKMTTbbdbYYd
GC content	39.17%
Information content (bits; total / per base)	14.723 / 0.669
Data sources	ChIP-Seq
Aligned words	81

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (2)	0.656	0.656	0.449	0.449	0.767	0.767	5.513	5.513	11.201	11.201

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF705 {2.3.3.7} (TFClass)
TFClass ID	TFClass: 2.3.3.7.3
HGNC	HGNC:37134
MGI
EntrezGene (human)	GeneID:100131980 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	Z705G_HUMAN
UniProt ID (mouse)
UniProt AC (human)	A8MUZ8 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	Z705G.H12INVITRO.0.P.D.pcm
PWM	Z705G.H12INVITRO.0.P.D.pwm
PFM	Z705G.H12INVITRO.0.P.D.pfm
Alignment	Z705G.H12INVITRO.0.P.D.words.tsv
Threshold to P-value map	Z705G.H12INVITRO.0.P.D.thr
Motif in other formats
JASPAR format	Z705G.H12INVITRO.0.P.D_jaspar_format.txt
MEME format	Z705G.H12INVITRO.0.P.D_meme_format.meme
Transfac format	Z705G.H12INVITRO.0.P.D_transfac_format.txt
Homer format	Z705G.H12INVITRO.0.P.D_homer_format_0.001.txt Z705G.H12INVITRO.0.P.D_homer_format_0.0005.txt Z705G.H12INVITRO.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	9.0	32.0	22.0	18.0
02	45.0	7.0	6.0	23.0
03	18.0	7.0	12.0	44.0
04	21.0	20.0	7.0	33.0
05	41.0	18.0	11.0	11.0
06	2.0	3.0	69.0	7.0
07	72.0	4.0	2.0	3.0
08	3.0	3.0	48.0	27.0
09	7.0	1.0	67.0	6.0
10	32.0	1.0	1.0	47.0
11	4.0	0.0	0.0	77.0
12	2.0	0.0	35.0	44.0
13	47.0	30.0	0.0	4.0
14	4.0	2.0	0.0	75.0
15	2.0	10.0	1.0	68.0
16	8.0	32.0	13.0	28.0
17	4.0	34.0	23.0	20.0
18	37.0	5.0	27.0	12.0
19	6.0	27.0	10.0	38.0
20	4.0	14.0	10.0	53.0
21	10.0	43.0	4.0	24.0
22	27.0	9.0	28.0	17.0

PFM

	A	C	G	T
01	0.111	0.395	0.272	0.222
02	0.556	0.086	0.074	0.284
03	0.222	0.086	0.148	0.543
04	0.259	0.247	0.086	0.407
05	0.506	0.222	0.136	0.136
06	0.025	0.037	0.852	0.086
07	0.889	0.049	0.025	0.037
08	0.037	0.037	0.593	0.333
09	0.086	0.012	0.827	0.074
10	0.395	0.012	0.012	0.58
11	0.049	0.0	0.0	0.951
12	0.025	0.0	0.432	0.543
13	0.58	0.37	0.0	0.049
14	0.049	0.025	0.0	0.926
15	0.025	0.123	0.012	0.84
16	0.099	0.395	0.16	0.346
17	0.049	0.42	0.284	0.247
18	0.457	0.062	0.333	0.148
19	0.074	0.333	0.123	0.469
20	0.049	0.173	0.123	0.654
21	0.123	0.531	0.049	0.296
22	0.333	0.111	0.346	0.21

PWM

	A	C	G	T
01	-0.749	0.439	0.079	-0.111
02	0.77	-0.969	-1.101	0.121
03	-0.111	-0.969	-0.488	0.748
04	0.035	-0.012	-0.969	0.468
05	0.679	-0.111	-0.568	-0.568
06	-1.93	-1.65	1.189	-0.969
07	1.231	-1.432	-1.93	-1.65
08	-1.65	-1.65	0.833	0.275
09	-0.969	-2.32	1.16	-1.101
10	0.439	-2.32	-2.32	0.812
11	-1.432	-2.967	-2.967	1.297
12	-1.93	-2.967	0.525	0.748
13	0.812	0.376	-2.967	-1.432
14	-1.432	-1.93	-2.967	1.271
15	-1.93	-0.654	-2.32	1.175
16	-0.853	0.439	-0.415	0.31
17	-1.432	0.497	0.121	-0.012
18	0.579	-1.253	0.275	-0.488
19	-1.101	0.275	-0.654	0.605
20	-1.432	-0.346	-0.654	0.93
21	-0.654	0.725	-1.432	0.162
22	0.275	-0.749	0.31	-0.165

Standard thresholds

P-value	Threshold
0.001	3.94021
0.0005	4.89966
0.0001	6.91981