Z585A.H12CORE.0.P.C motif - HOmo sapiens COmprehensive MOdel COllection

Motif	Z585A.H12CORE.0.P.C
Gene (human)	ZNF585A (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	C

Motif length	23
Consensus	vdvvvvvdRRdRRARWAYRGAvd
GC content	35.58%
Information content (bits; total / per base)	14.813 / 0.644
Data sources	ChIP-Seq
Aligned words	1003

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (4)	0.738	0.748	0.549	0.562	0.86	0.874	4.428	4.579	95.282	109.149

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF81-like {2.3.3.68} (TFClass)
TFClass ID	TFClass: 2.3.3.68.6
HGNC	HGNC:26305
MGI
EntrezGene (human)	GeneID:199704 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	Z585A_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q6P3V2 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	Z585A.H12CORE.0.P.C.pcm
PWM	Z585A.H12CORE.0.P.C.pwm
PFM	Z585A.H12CORE.0.P.C.pfm
Alignment	Z585A.H12CORE.0.P.C.words.tsv
Threshold to P-value map	Z585A.H12CORE.0.P.C.thr
Motif in other formats
JASPAR format	Z585A.H12CORE.0.P.C_jaspar_format.txt
MEME format	Z585A.H12CORE.0.P.C_meme_format.meme
Transfac format	Z585A.H12CORE.0.P.C_transfac_format.txt
Homer format	Z585A.H12CORE.0.P.C_homer_format_0.001.txt Z585A.H12CORE.0.P.C_homer_format_0.0005.txt Z585A.H12CORE.0.P.C_homer_format_0.0001.txt

PCM

	A	C	G	T
01	491.0	126.0	270.0	116.0
02	564.0	78.0	222.0	139.0
03	522.0	138.0	244.0	99.0
04	498.0	156.0	226.0	123.0
05	523.0	156.0	197.0	127.0
06	523.0	156.0	189.0	135.0
07	548.0	113.0	245.0	97.0
08	531.0	112.0	220.0	140.0
09	623.0	69.0	258.0	53.0
10	719.0	50.0	160.0	74.0
11	473.0	30.0	254.0	246.0
12	699.0	54.0	218.0	32.0
13	295.0	12.0	689.0	7.0
14	979.0	8.0	13.0	3.0
15	471.0	15.0	511.0	6.0
16	603.0	84.0	26.0	290.0
17	904.0	44.0	31.0	24.0
18	116.0	680.0	27.0	180.0
19	743.0	47.0	129.0	84.0
20	106.0	22.0	866.0	9.0
21	847.0	17.0	61.0	78.0
22	289.0	234.0	440.0	40.0
23	540.0	142.0	169.0	152.0

PFM

	A	C	G	T
01	0.49	0.126	0.269	0.116
02	0.562	0.078	0.221	0.139
03	0.52	0.138	0.243	0.099
04	0.497	0.156	0.225	0.123
05	0.521	0.156	0.196	0.127
06	0.521	0.156	0.188	0.135
07	0.546	0.113	0.244	0.097
08	0.529	0.112	0.219	0.14
09	0.621	0.069	0.257	0.053
10	0.717	0.05	0.16	0.074
11	0.472	0.03	0.253	0.245
12	0.697	0.054	0.217	0.032
13	0.294	0.012	0.687	0.007
14	0.976	0.008	0.013	0.003
15	0.47	0.015	0.509	0.006
16	0.601	0.084	0.026	0.289
17	0.901	0.044	0.031	0.024
18	0.116	0.678	0.027	0.179
19	0.741	0.047	0.129	0.084
20	0.106	0.022	0.863	0.009
21	0.844	0.017	0.061	0.078
22	0.288	0.233	0.439	0.04
23	0.538	0.142	0.168	0.152

PWM

	A	C	G	T
01	0.669	-0.681	0.073	-0.763
02	0.807	-1.153	-0.121	-0.584
03	0.73	-0.592	-0.027	-0.919
04	0.683	-0.47	-0.103	-0.705
05	0.732	-0.47	-0.239	-0.674
06	0.732	-0.47	-0.28	-0.613
07	0.778	-0.789	-0.023	-0.939
08	0.747	-0.798	-0.13	-0.577
09	0.906	-1.272	0.028	-1.529
10	1.049	-1.585	-0.445	-1.204
11	0.631	-2.074	0.013	-0.019
12	1.021	-1.511	-0.139	-2.013
13	0.161	-2.912	1.006	-3.365
14	1.357	-3.256	-2.842	-3.978
15	0.627	-2.714	0.708	-3.487
16	0.873	-1.08	-2.209	0.144
17	1.277	-1.709	-2.043	-2.284
18	-0.763	0.993	-2.173	-0.329
19	1.082	-1.645	-0.658	-1.08
20	-0.852	-2.365	1.235	-3.158
21	1.212	-2.601	-1.393	-1.153
22	0.141	-0.069	0.559	-1.8
23	0.763	-0.563	-0.391	-0.496

Standard thresholds

P-value	Threshold
0.001	3.41316
0.0005	4.46041
0.0001	6.66061