Z354A.H12INVITRO.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	Z354A.H12INVITRO.0.P.D
Gene (human)	ZNF354A (GeneCards)
Gene synonyms (human)	EZNF, HKL1, TCF17
Gene (mouse)	Znf354a
Gene synonyms (mouse)	Kid1, Tcf17, Zfp354a
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	23
Consensus	YTTMRdYCATTTACATTTAWTGY
GC content	25.78%
Information content (bits; total / per base)	25.129 / 1.093
Data sources	ChIP-Seq
Aligned words	676

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	2 (9)	0.875	0.928	0.878	0.925	0.888	0.941	10.81	11.504	174.337	302.26

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF354A-like {2.3.3.64} (TFClass)
TFClass ID	TFClass: 2.3.3.64.1
HGNC	HGNC:11628
MGI	MGI:103172
EntrezGene (human)	GeneID:6940 (SSTAR profile)
EntrezGene (mouse)	GeneID:21408 (SSTAR profile)
UniProt ID (human)	Z354A_HUMAN
UniProt ID (mouse)	Z354A_MOUSE
UniProt AC (human)	O60765 (TFClass)
UniProt AC (mouse)	Q61751 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	Z354A.H12INVITRO.0.P.D.pcm
PWM	Z354A.H12INVITRO.0.P.D.pwm
PFM	Z354A.H12INVITRO.0.P.D.pfm
Alignment	Z354A.H12INVITRO.0.P.D.words.tsv
Threshold to P-value map	Z354A.H12INVITRO.0.P.D.thr
Motif in other formats
JASPAR format	Z354A.H12INVITRO.0.P.D_jaspar_format.txt
MEME format	Z354A.H12INVITRO.0.P.D_meme_format.meme
Transfac format	Z354A.H12INVITRO.0.P.D_transfac_format.txt
Homer format	Z354A.H12INVITRO.0.P.D_homer_format_0.001.txt Z354A.H12INVITRO.0.P.D_homer_format_0.0005.txt Z354A.H12INVITRO.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	51.0	57.0	29.0	539.0
02	27.0	33.0	20.0	596.0
03	24.0	67.0	32.0	553.0
04	475.0	74.0	66.0	61.0
05	198.0	14.0	390.0	74.0
06	222.0	73.0	96.0	285.0
07	54.0	427.0	30.0	165.0
08	13.0	619.0	4.0	40.0
09	551.0	43.0	39.0	43.0
10	26.0	35.0	17.0	598.0
11	4.0	11.0	10.0	651.0
12	17.0	54.0	8.0	597.0
13	570.0	81.0	14.0	11.0
14	5.0	502.0	14.0	155.0
15	570.0	11.0	64.0	31.0
16	10.0	24.0	23.0	619.0
17	3.0	13.0	26.0	634.0
18	2.0	66.0	10.0	598.0
19	574.0	40.0	44.0	18.0
20	426.0	19.0	115.0	116.0
21	35.0	16.0	5.0	620.0
22	81.0	11.0	546.0	38.0
23	48.0	77.0	40.0	511.0

PFM

	A	C	G	T
01	0.075	0.084	0.043	0.797
02	0.04	0.049	0.03	0.882
03	0.036	0.099	0.047	0.818
04	0.703	0.109	0.098	0.09
05	0.293	0.021	0.577	0.109
06	0.328	0.108	0.142	0.422
07	0.08	0.632	0.044	0.244
08	0.019	0.916	0.006	0.059
09	0.815	0.064	0.058	0.064
10	0.038	0.052	0.025	0.885
11	0.006	0.016	0.015	0.963
12	0.025	0.08	0.012	0.883
13	0.843	0.12	0.021	0.016
14	0.007	0.743	0.021	0.229
15	0.843	0.016	0.095	0.046
16	0.015	0.036	0.034	0.916
17	0.004	0.019	0.038	0.938
18	0.003	0.098	0.015	0.885
19	0.849	0.059	0.065	0.027
20	0.63	0.028	0.17	0.172
21	0.052	0.024	0.007	0.917
22	0.12	0.016	0.808	0.056
23	0.071	0.114	0.059	0.756

PWM

	A	C	G	T
01	-1.176	-1.068	-1.718	1.153
02	-1.785	-1.595	-2.065	1.253
03	-1.896	-0.911	-1.624	1.179
04	1.027	-0.814	-0.925	-1.002
05	0.157	-2.39	0.831	-0.814
06	0.27	-0.827	-0.558	0.519
07	-1.121	0.921	-1.685	-0.024
08	-2.456	1.291	-3.412	-1.411
09	1.175	-1.341	-1.435	-1.341
10	-1.821	-1.539	-2.215	1.257
11	-3.412	-2.603	-2.686	1.342
12	-2.215	-1.121	-2.875	1.255
13	1.209	-0.725	-2.39	-2.603
14	-3.248	1.082	-2.39	-0.086
15	1.209	-2.603	-0.955	-1.654
16	-2.686	-1.896	-1.936	1.291
17	-3.607	-2.456	-1.821	1.315
18	-3.851	-0.925	-2.686	1.257
19	1.216	-1.411	-1.319	-2.162
20	0.919	-2.113	-0.38	-0.372
21	-1.539	-2.27	-3.248	1.293
22	-0.725	-2.603	1.166	-1.46
23	-1.235	-0.775	-1.411	1.1

Standard thresholds

P-value	Threshold
0.001	-0.97054
0.0005	0.43771
0.0001	3.45891