Motif | Z354A.H12INVITRO.0.P.D |
Gene (human) | ZNF354A (GeneCards) |
Gene synonyms (human) | EZNF, HKL1, TCF17 |
Gene (mouse) | Znf354a |
Gene synonyms (mouse) | Kid1, Tcf17, Zfp354a |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 0 |
Quality | D |
Motif | Z354A.H12INVITRO.0.P.D |
Gene (human) | ZNF354A (GeneCards) |
Gene synonyms (human) | EZNF, HKL1, TCF17 |
Gene (mouse) | Znf354a |
Gene synonyms (mouse) | Kid1, Tcf17, Zfp354a |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 0 |
Quality | D |
Motif length | 23 |
Consensus | YTTMRdYCATTTACATTTAWTGY |
GC content | 25.78% |
Information content (bits; total / per base) | 25.129 / 1.093 |
Data sources | ChIP-Seq |
Aligned words | 676 |
ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
---|---|---|---|---|---|---|---|---|---|---|---|
Human | 2 (9) | 0.875 | 0.928 | 0.878 | 0.925 | 0.888 | 0.941 | 10.81 | 11.504 | 174.337 | 302.26 |
TF superclass | Zinc-coordinating DNA-binding domains {2} (TFClass) |
TF class | C2H2 zinc finger factors {2.3} (TFClass) |
TF family | More than 3 adjacent zinc fingers {2.3.3} (TFClass) |
TF subfamily | ZNF354A-like {2.3.3.64} (TFClass) |
TFClass ID | TFClass: 2.3.3.64.1 |
HGNC | HGNC:11628 |
MGI | MGI:103172 |
EntrezGene (human) | GeneID:6940 (SSTAR profile) |
EntrezGene (mouse) | GeneID:21408 (SSTAR profile) |
UniProt ID (human) | Z354A_HUMAN |
UniProt ID (mouse) | Z354A_MOUSE |
UniProt AC (human) | O60765 (TFClass) |
UniProt AC (mouse) | Q61751 (TFClass) |
GRECO-DB-TF | yes |
ChIP-Seq | 2 human, 0 mouse |
HT-SELEX | 0 |
Methyl-HT-SELEX | 0 |
PCM | Z354A.H12INVITRO.0.P.D.pcm |
PWM | Z354A.H12INVITRO.0.P.D.pwm |
PFM | Z354A.H12INVITRO.0.P.D.pfm |
Alignment | Z354A.H12INVITRO.0.P.D.words.tsv |
Threshold to P-value map | Z354A.H12INVITRO.0.P.D.thr |
Motif in other formats | |
JASPAR format | Z354A.H12INVITRO.0.P.D_jaspar_format.txt |
MEME format | Z354A.H12INVITRO.0.P.D_meme_format.meme |
Transfac format | Z354A.H12INVITRO.0.P.D_transfac_format.txt |
Homer format |
A | C | G | T | |
---|---|---|---|---|
01 | 51.0 | 57.0 | 29.0 | 539.0 |
02 | 27.0 | 33.0 | 20.0 | 596.0 |
03 | 24.0 | 67.0 | 32.0 | 553.0 |
04 | 475.0 | 74.0 | 66.0 | 61.0 |
05 | 198.0 | 14.0 | 390.0 | 74.0 |
06 | 222.0 | 73.0 | 96.0 | 285.0 |
07 | 54.0 | 427.0 | 30.0 | 165.0 |
08 | 13.0 | 619.0 | 4.0 | 40.0 |
09 | 551.0 | 43.0 | 39.0 | 43.0 |
10 | 26.0 | 35.0 | 17.0 | 598.0 |
11 | 4.0 | 11.0 | 10.0 | 651.0 |
12 | 17.0 | 54.0 | 8.0 | 597.0 |
13 | 570.0 | 81.0 | 14.0 | 11.0 |
14 | 5.0 | 502.0 | 14.0 | 155.0 |
15 | 570.0 | 11.0 | 64.0 | 31.0 |
16 | 10.0 | 24.0 | 23.0 | 619.0 |
17 | 3.0 | 13.0 | 26.0 | 634.0 |
18 | 2.0 | 66.0 | 10.0 | 598.0 |
19 | 574.0 | 40.0 | 44.0 | 18.0 |
20 | 426.0 | 19.0 | 115.0 | 116.0 |
21 | 35.0 | 16.0 | 5.0 | 620.0 |
22 | 81.0 | 11.0 | 546.0 | 38.0 |
23 | 48.0 | 77.0 | 40.0 | 511.0 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.075 | 0.084 | 0.043 | 0.797 |
02 | 0.04 | 0.049 | 0.03 | 0.882 |
03 | 0.036 | 0.099 | 0.047 | 0.818 |
04 | 0.703 | 0.109 | 0.098 | 0.09 |
05 | 0.293 | 0.021 | 0.577 | 0.109 |
06 | 0.328 | 0.108 | 0.142 | 0.422 |
07 | 0.08 | 0.632 | 0.044 | 0.244 |
08 | 0.019 | 0.916 | 0.006 | 0.059 |
09 | 0.815 | 0.064 | 0.058 | 0.064 |
10 | 0.038 | 0.052 | 0.025 | 0.885 |
11 | 0.006 | 0.016 | 0.015 | 0.963 |
12 | 0.025 | 0.08 | 0.012 | 0.883 |
13 | 0.843 | 0.12 | 0.021 | 0.016 |
14 | 0.007 | 0.743 | 0.021 | 0.229 |
15 | 0.843 | 0.016 | 0.095 | 0.046 |
16 | 0.015 | 0.036 | 0.034 | 0.916 |
17 | 0.004 | 0.019 | 0.038 | 0.938 |
18 | 0.003 | 0.098 | 0.015 | 0.885 |
19 | 0.849 | 0.059 | 0.065 | 0.027 |
20 | 0.63 | 0.028 | 0.17 | 0.172 |
21 | 0.052 | 0.024 | 0.007 | 0.917 |
22 | 0.12 | 0.016 | 0.808 | 0.056 |
23 | 0.071 | 0.114 | 0.059 | 0.756 |
A | C | G | T | |
---|---|---|---|---|
01 | -1.176 | -1.068 | -1.718 | 1.153 |
02 | -1.785 | -1.595 | -2.065 | 1.253 |
03 | -1.896 | -0.911 | -1.624 | 1.179 |
04 | 1.027 | -0.814 | -0.925 | -1.002 |
05 | 0.157 | -2.39 | 0.831 | -0.814 |
06 | 0.27 | -0.827 | -0.558 | 0.519 |
07 | -1.121 | 0.921 | -1.685 | -0.024 |
08 | -2.456 | 1.291 | -3.412 | -1.411 |
09 | 1.175 | -1.341 | -1.435 | -1.341 |
10 | -1.821 | -1.539 | -2.215 | 1.257 |
11 | -3.412 | -2.603 | -2.686 | 1.342 |
12 | -2.215 | -1.121 | -2.875 | 1.255 |
13 | 1.209 | -0.725 | -2.39 | -2.603 |
14 | -3.248 | 1.082 | -2.39 | -0.086 |
15 | 1.209 | -2.603 | -0.955 | -1.654 |
16 | -2.686 | -1.896 | -1.936 | 1.291 |
17 | -3.607 | -2.456 | -1.821 | 1.315 |
18 | -3.851 | -0.925 | -2.686 | 1.257 |
19 | 1.216 | -1.411 | -1.319 | -2.162 |
20 | 0.919 | -2.113 | -0.38 | -0.372 |
21 | -1.539 | -2.27 | -3.248 | 1.293 |
22 | -0.725 | -2.603 | 1.166 | -1.46 |
23 | -1.235 | -0.775 | -1.411 | 1.1 |
P-value | Threshold |
---|---|
0.001 | -0.97054 |
0.0005 | 0.43771 |
0.0001 | 3.45891 |