Z280A.H12RSNP.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	Z280A.H12RSNP.0.P.D
Gene (human)	ZNF280A (GeneCards)
Gene synonyms (human)	SUHW1, ZNF280, ZNF636
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	15
Consensus	bhvWRCAGRARRvWR
GC content	46.54%
Information content (bits; total / per base)	11.099 / 0.74
Data sources	ChIP-Seq
Aligned words	1014

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	2 (12)	0.676	0.772	0.542	0.678	0.695	0.799	2.11	2.988	43.161	102.745

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF280-like {2.3.3.4} (TFClass)
TFClass ID	TFClass: 2.3.3.4.1
HGNC	HGNC:18597
MGI
EntrezGene (human)	GeneID:129025 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	Z280A_HUMAN
UniProt ID (mouse)
UniProt AC (human)	P59817 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	Z280A.H12RSNP.0.P.D.pcm
PWM	Z280A.H12RSNP.0.P.D.pwm
PFM	Z280A.H12RSNP.0.P.D.pfm
Alignment	Z280A.H12RSNP.0.P.D.words.tsv
Threshold to P-value map	Z280A.H12RSNP.0.P.D.thr
Motif in other formats
JASPAR format	Z280A.H12RSNP.0.P.D_jaspar_format.txt
MEME format	Z280A.H12RSNP.0.P.D_meme_format.meme
Transfac format	Z280A.H12RSNP.0.P.D_transfac_format.txt
Homer format	Z280A.H12RSNP.0.P.D_homer_format_0.001.txt Z280A.H12RSNP.0.P.D_homer_format_0.0005.txt Z280A.H12RSNP.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	148.0	283.0	168.0	415.0
02	395.0	198.0	60.0	361.0
03	265.0	452.0	202.0	95.0
04	268.0	21.0	190.0	535.0
05	166.0	53.0	761.0	34.0
06	67.0	846.0	32.0	69.0
07	922.0	1.0	17.0	74.0
08	32.0	30.0	939.0	13.0
09	757.0	94.0	153.0	10.0
10	860.0	6.0	123.0	25.0
11	352.0	4.0	642.0	16.0
12	386.0	19.0	544.0	65.0
13	225.0	275.0	385.0	129.0
14	674.0	103.0	19.0	218.0
15	515.0	28.0	430.0	41.0

PFM

	A	C	G	T
01	0.146	0.279	0.166	0.409
02	0.39	0.195	0.059	0.356
03	0.261	0.446	0.199	0.094
04	0.264	0.021	0.187	0.528
05	0.164	0.052	0.75	0.034
06	0.066	0.834	0.032	0.068
07	0.909	0.001	0.017	0.073
08	0.032	0.03	0.926	0.013
09	0.747	0.093	0.151	0.01
10	0.848	0.006	0.121	0.025
11	0.347	0.004	0.633	0.016
12	0.381	0.019	0.536	0.064
13	0.222	0.271	0.38	0.127
14	0.665	0.102	0.019	0.215
15	0.508	0.028	0.424	0.04

PWM

	A	C	G	T
01	-0.533	0.109	-0.408	0.49
02	0.441	-0.245	-1.419	0.351
03	0.044	0.575	-0.225	-0.97
04	0.055	-2.418	-0.286	0.743
05	-0.42	-1.54	1.095	-1.966
06	-1.312	1.2	-2.024	-1.283
07	1.286	-4.538	-2.612	-1.215
08	-2.024	-2.085	1.304	-2.852
09	1.089	-0.981	-0.5	-3.08
10	1.217	-3.497	-0.716	-2.256
11	0.326	-3.796	0.925	-2.667
12	0.418	-2.511	0.76	-1.342
13	-0.118	0.081	0.416	-0.669
14	0.974	-0.891	-2.511	-0.15
15	0.705	-2.15	0.526	-1.787

Standard thresholds

P-value	Threshold
0.001	4.46826
0.0005	5.36266
0.0001	7.20541