MotifYBOX1.H12INVIVO.0.SM.D
Gene (human)YBX1
(GeneCards)
Gene synonyms (human)NSEP1, YB1
Gene (mouse)Ybx1
Gene synonyms (mouse)Msy-1, Msy1, Nsep1, Yb1
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
D
Motif length13
ConsensusnhKTWCCATChhn
GC content49.93%
Information content (bits; total / per base)12.972 / 0.998
Data sourcesHT-SELEX + Methyl-HT-SELEX
Aligned words7092

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 3 experiments median 0.949 0.928 0.882 0.853 0.78 0.763
best 0.958 0.939 0.911 0.882 0.829 0.804
Methyl HT-SELEX, 1 experiments median 0.856 0.807 0.789 0.741 0.712 0.68
best 0.856 0.807 0.789 0.741 0.712 0.68
Non-Methyl HT-SELEX, 2 experiments median 0.954 0.934 0.896 0.867 0.805 0.783
best 0.958 0.939 0.911 0.882 0.829 0.804
TF superclassbeta-Barrel DNA-binding domains {9} (TFClass)
TF classCold-shock domain factors {9.1} (TFClass)
TF familyDbp {9.1.1} (TFClass)
TF subfamilyB {9.1.1.2} (TFClass)
TFClass IDTFClass: 9.1.1.2.1
HGNCHGNC:8014
MGIMGI:99146
EntrezGene (human)GeneID:4904
(SSTAR profile)
EntrezGene (mouse)GeneID:22608
(SSTAR profile)
UniProt ID (human)YBOX1_HUMAN
UniProt ID (mouse)YBOX1_MOUSE
UniProt AC (human)P67809
(TFClass)
UniProt AC (mouse)P62960
(TFClass)
GRECO-DB-TF
no
ChIP-Seq 0 human, 0 mouse
HT-SELEX 2
Methyl-HT-SELEX 1
PCM
ACGT
011563.52226.51307.51994.5
021046.53015.5687.52342.5
03347.0606.05444.0695.0
0491.0958.029.06014.0
054327.0116.015.02634.0
06382.06697.00.013.0
070.07043.00.049.0
087086.00.00.06.0
090.0763.00.06329.0
100.07091.01.00.0
111449.03415.0311.01917.0
121836.752126.75556.752571.75
131309.52432.51190.52159.5
PFM
ACGT
010.220.3140.1840.281
020.1480.4250.0970.33
030.0490.0850.7680.098
040.0130.1350.0040.848
050.610.0160.0020.371
060.0540.9440.00.002
070.00.9930.00.007
080.9990.00.00.001
090.00.1080.00.892
100.01.00.00.0
110.2040.4820.0440.27
120.2590.30.0790.363
130.1850.3430.1680.304
PWM
ACGT
01-0.1260.228-0.3040.118
02-0.5260.531-0.9450.278
03-1.626-1.0711.121-0.935
04-2.947-0.615-4.0411.221
050.891-2.709-4.6360.395
06-1.531.328-6.686-4.759
07-6.6861.378-6.686-3.546
081.385-6.686-6.686-5.376
09-6.686-0.842-6.6861.272
10-6.6861.385-6.313-6.686
11-0.2020.655-1.7350.078
120.0350.182-1.1560.372
13-0.3030.316-0.3980.197
Standard thresholds
P-value Threshold
0.001 2.92616
0.0005 4.484215
0.0001 7.306865