MotifVSX1.H12INVIVO.1.SM.D
Gene (human)VSX1
(GeneCards)
Gene synonyms (human)RINX
Gene (mouse)Vsx1
Gene synonyms (mouse)Rinx
LOGO
LOGO (reverse complement)
Motif subtype1
Quality
D
Motif length17
ConsensusnvSTAATTAGYhMWWhd
GC content30.96%
Information content (bits; total / per base)16.689 / 0.982
Data sourcesHT-SELEX + Methyl-HT-SELEX
Aligned words1689

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 10 experiments median 0.993 0.989 0.986 0.979 0.958 0.941
best 0.997 0.995 0.994 0.99 0.984 0.978
Methyl HT-SELEX, 2 experiments median 0.982 0.969 0.975 0.959 0.958 0.939
best 0.997 0.995 0.994 0.99 0.984 0.978
Non-Methyl HT-SELEX, 8 experiments median 0.993 0.989 0.986 0.979 0.958 0.941
best 0.996 0.994 0.99 0.985 0.977 0.966

rSNP benchmarking, SNP-SELEX auROC auPRC Pearson r Kendall tau
batch 1 0.927 0.083 0.909 0.494
batch 2 0.877 0.728 0.785 0.566
TF superclassHelix-turn-helix domains {3} (TFClass)
TF classHomeo domain factors {3.1} (TFClass)
TF familyPaired-related HD {3.1.3} (TFClass)
TF subfamilyVSX {3.1.3.28} (TFClass)
TFClass IDTFClass: 3.1.3.28.1
HGNCHGNC:12723
MGIMGI:1890816
EntrezGene (human)GeneID:30813
(SSTAR profile)
EntrezGene (mouse)GeneID:114889
(SSTAR profile)
UniProt ID (human)VSX1_HUMAN
UniProt ID (mouse)VSX1_MOUSE
UniProt AC (human)Q9NZR4
(TFClass)
UniProt AC (mouse)Q91V10
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 0 mouse
HT-SELEX 8
Methyl-HT-SELEX 2
PCM
ACGT
01401.25532.25496.25259.25
02357.25305.25902.25124.25
0389.01068.0292.0240.0
041.046.00.01642.0
051689.00.00.00.0
061689.00.00.00.0
070.00.00.01689.0
080.00.00.01689.0
091620.00.069.00.0
10283.087.01318.01.0
1132.01109.068.0480.0
12244.0618.084.0743.0
131156.0237.0108.0188.0
14983.0181.081.0444.0
15301.0178.0105.01105.0
16488.0201.0156.0844.0
17665.5267.5379.5376.5
PFM
ACGT
010.2380.3150.2940.153
020.2120.1810.5340.074
030.0530.6320.1730.142
040.0010.0270.00.972
051.00.00.00.0
061.00.00.00.0
070.00.00.01.0
080.00.00.01.0
090.9590.00.0410.0
100.1680.0520.780.001
110.0190.6570.040.284
120.1440.3660.050.44
130.6840.140.0640.111
140.5820.1070.0480.263
150.1780.1050.0620.654
160.2890.1190.0920.5
170.3940.1580.2250.223
PWM
ACGT
01-0.0510.2310.161-0.485
02-0.166-0.3230.757-1.213
03-1.5410.925-0.367-0.562
04-5.0-2.182-5.4311.355
051.383-5.431-5.431-5.431
061.383-5.431-5.431-5.431
07-5.431-5.431-5.4311.383
08-5.431-5.431-5.4311.383
091.341-5.431-1.789-5.431
10-0.398-1.5631.135-5.0
11-2.5280.963-1.8040.128
12-0.5450.38-1.5970.563
131.004-0.574-1.351-0.804
140.843-0.841-1.6330.05
15-0.337-0.858-1.3780.959
160.144-0.737-0.9880.69
170.453-0.454-0.106-0.114
Standard thresholds
P-value Threshold
0.001 0.78201
0.0005 2.35326
0.0001 5.71161