VEZF1.H12INVIVO.1.P.B motif - HOmo sapiens COmprehensive MOdel COllection

Motif	VEZF1.H12INVIVO.1.P.B
Gene (human)	VEZF1 (GeneCards)
Gene synonyms (human)	DB1, ZNF161
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	1
Quality	B

Motif length	23
Consensus	RSdRRRGGMGGRGvvvRRRRvRR
GC content	77.13%
Information content (bits; total / per base)	17.018 / 0.74
Data sources	ChIP-Seq
Aligned words	994

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	3 (19)	0.815	0.847	0.65	0.739	0.87	0.942	4.502	5.309	73.187	137.77

rSNP benchmarking, ADASTRA	odds-ratio	-log-Fisher's P	Pearson r	Kendall tau
#	1.551	1.687	0.045	0.028

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	Multiple dispersed zinc fingers {2.3.4} (TFClass)
TF subfamily	MAZ-like {2.3.4.8} (TFClass)
TFClass ID	TFClass: 2.3.4.8.2
HGNC	HGNC:12949
MGI
EntrezGene (human)	GeneID:7716 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	VEZF1_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q14119 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	3 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	VEZF1.H12INVIVO.1.P.B.pcm
PWM	VEZF1.H12INVIVO.1.P.B.pwm
PFM	VEZF1.H12INVIVO.1.P.B.pfm
Alignment	VEZF1.H12INVIVO.1.P.B.words.tsv
Threshold to P-value map	VEZF1.H12INVIVO.1.P.B.thr
Motif in other formats
JASPAR format	VEZF1.H12INVIVO.1.P.B_jaspar_format.txt
MEME format	VEZF1.H12INVIVO.1.P.B_meme_format.meme
Transfac format	VEZF1.H12INVIVO.1.P.B_transfac_format.txt
Homer format	VEZF1.H12INVIVO.1.P.B_homer_format_0.001.txt VEZF1.H12INVIVO.1.P.B_homer_format_0.0005.txt VEZF1.H12INVIVO.1.P.B_homer_format_0.0001.txt

PCM

	A	C	G	T
01	193.0	118.0	603.0	80.0
02	160.0	184.0	595.0	55.0
03	273.0	75.0	540.0	106.0
04	194.0	155.0	610.0	35.0
05	249.0	92.0	591.0	62.0
06	204.0	21.0	742.0	27.0
07	43.0	9.0	926.0	16.0
08	16.0	10.0	960.0	8.0
09	407.0	448.0	16.0	123.0
10	41.0	12.0	910.0	31.0
11	10.0	8.0	960.0	16.0
12	204.0	50.0	717.0	23.0
13	75.0	37.0	862.0	20.0
14	171.0	224.0	536.0	63.0
15	225.0	250.0	433.0	86.0
16	196.0	149.0	561.0	88.0
17	171.0	130.0	645.0	48.0
18	182.0	123.0	628.0	61.0
19	157.0	130.0	647.0	60.0
20	141.0	110.0	667.0	76.0
21	250.0	150.0	516.0	78.0
22	210.0	37.0	678.0	69.0
23	159.0	95.0	673.0	67.0

PFM

	A	C	G	T
01	0.194	0.119	0.607	0.08
02	0.161	0.185	0.599	0.055
03	0.275	0.075	0.543	0.107
04	0.195	0.156	0.614	0.035
05	0.251	0.093	0.595	0.062
06	0.205	0.021	0.746	0.027
07	0.043	0.009	0.932	0.016
08	0.016	0.01	0.966	0.008
09	0.409	0.451	0.016	0.124
10	0.041	0.012	0.915	0.031
11	0.01	0.008	0.966	0.016
12	0.205	0.05	0.721	0.023
13	0.075	0.037	0.867	0.02
14	0.172	0.225	0.539	0.063
15	0.226	0.252	0.436	0.087
16	0.197	0.15	0.564	0.089
17	0.172	0.131	0.649	0.048
18	0.183	0.124	0.632	0.061
19	0.158	0.131	0.651	0.06
20	0.142	0.111	0.671	0.076
21	0.252	0.151	0.519	0.078
22	0.211	0.037	0.682	0.069
23	0.16	0.096	0.677	0.067

PWM

	A	C	G	T
01	-0.251	-0.737	0.882	-1.119
02	-0.436	-0.298	0.869	-1.484
03	0.093	-1.182	0.772	-0.843
04	-0.246	-0.468	0.894	-1.919
05	0.002	-0.982	0.862	-1.368
06	-0.196	-2.399	1.089	-2.165
07	-1.722	-3.15	1.31	-2.647
08	-2.647	-3.061	1.346	-3.248
09	0.491	0.586	-2.647	-0.696
10	-1.768	-2.903	1.293	-2.034
11	-3.061	-3.248	1.346	-2.647
12	-0.196	-1.576	1.055	-2.315
13	-1.182	-1.866	1.239	-2.444
14	-0.371	-0.103	0.765	-1.352
15	-0.099	0.006	0.552	-1.048
16	-0.235	-0.507	0.81	-1.026
17	-0.371	-0.642	0.95	-1.616
18	-0.309	-0.696	0.923	-1.384
19	-0.455	-0.642	0.953	-1.4
20	-0.561	-0.806	0.983	-1.169
21	0.006	-0.5	0.727	-1.144
22	-0.167	-1.866	0.999	-1.264
23	-0.443	-0.95	0.992	-1.292

Standard thresholds

P-value	Threshold
0.001	2.62436
0.0005	3.75521
0.0001	6.15361