MotifVEZF1.H12INVIVO.0.P.C
Gene (human)VEZF1
(GeneCards)
Gene synonyms (human)DB1, ZNF161
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
C
Motif length11
ConsensusRRGGGhGGGGS
GC content86.21%
Information content (bits; total / per base)14.534 / 1.321
Data sourcesChIP-Seq
Aligned words999

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 3 (19) 0.806 0.86 0.617 0.745 0.852 0.907 2.807 3.179 76.886 142.31

rSNP benchmarking, ADASTRA odds-ratio -log-Fisher's P Pearson r Kendall tau
# 1.633 1.936 0.082 0.054
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classC2H2 zinc finger factors {2.3} (TFClass)
TF familyMultiple dispersed zinc fingers {2.3.4} (TFClass)
TF subfamilyMAZ-like {2.3.4.8} (TFClass)
TFClass IDTFClass: 2.3.4.8.2
HGNCHGNC:12949
MGI
EntrezGene (human)GeneID:7716
(SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)VEZF1_HUMAN
UniProt ID (mouse)
UniProt AC (human)Q14119
(TFClass)
UniProt AC (mouse)
GRECO-DB-TF
yes
ChIP-Seq 3 human, 0 mouse
HT-SELEX 0
Methyl-HT-SELEX 0
PCM
ACGT
01164.052.0718.065.0
02174.058.0757.010.0
03241.04.0746.08.0
049.02.0984.04.0
0523.00.0974.02.0
06447.0447.011.094.0
075.01.0977.016.0
085.03.0978.013.0
0970.01.0923.05.0
1023.02.0968.06.0
1196.0371.0497.035.0
PFM
ACGT
010.1640.0520.7190.065
020.1740.0580.7580.01
030.2410.0040.7470.008
040.0090.0020.9850.004
050.0230.00.9750.002
060.4470.4470.0110.094
070.0050.0010.9780.016
080.0050.0030.9790.013
090.070.0010.9240.005
100.0230.0020.9690.006
110.0960.3710.4970.035
PWM
ACGT
01-0.417-1.5431.052-1.327
02-0.358-1.4381.104-3.065
03-0.035-3.7821.09-3.252
04-3.155-4.2121.366-3.782
05-2.319-4.9811.356-4.212
060.5790.579-2.984-0.966
07-3.621-4.5241.359-2.652
08-3.621-3.9741.36-2.838
09-1.254-4.5241.302-3.621
10-2.319-4.2121.35-3.483
11-0.9450.3930.685-1.924
Standard thresholds
P-value Threshold
0.001 2.751805
0.0005 4.02438
0.0001 6.60915