MotifVEZF1.H12INVITRO.1.P.D
Gene (human)VEZF1
(GeneCards)
Gene synonyms (human)DB1, ZNF161
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype1
Quality
D
Motif length23
ConsensusdRRvRRRRGSWGRRRvvRvdvdd
GC content63.99%
Information content (bits; total / per base)12.788 / 0.556
Data sourcesChIP-Seq
Aligned words1001

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 3 (19) 0.779 0.817 0.603 0.671 0.87 0.922 3.918 4.624 20.509 61.745

rSNP benchmarking, ADASTRA odds-ratio -log-Fisher's P Pearson r Kendall tau
# 1.632 2.026 0.107 0.05
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classC2H2 zinc finger factors {2.3} (TFClass)
TF familyMultiple dispersed zinc fingers {2.3.4} (TFClass)
TF subfamilyMAZ-like {2.3.4.8} (TFClass)
TFClass IDTFClass: 2.3.4.8.2
HGNCHGNC:12949
MGI
EntrezGene (human)GeneID:7716
(SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)VEZF1_HUMAN
UniProt ID (mouse)
UniProt AC (human)Q14119
(TFClass)
UniProt AC (mouse)
GRECO-DB-TF
yes
ChIP-Seq 3 human, 0 mouse
HT-SELEX 0
Methyl-HT-SELEX 0
PCM
ACGT
01311.089.0477.0124.0
02239.056.0594.0112.0
03226.074.0654.047.0
04295.096.0522.088.0
05312.079.0533.077.0
06200.0107.0633.061.0
07400.050.0470.081.0
08304.035.0622.040.0
0975.013.0876.037.0
1028.0213.0728.032.0
11704.089.019.0189.0
1227.012.0924.038.0
13178.042.0695.086.0
14251.039.0674.037.0
15240.036.0646.079.0
16314.0214.0410.063.0
17409.0135.0369.088.0
18277.064.0559.0101.0
19240.0123.0532.0106.0
20372.087.0449.093.0
21394.0104.0415.088.0
22300.061.0509.0131.0
23249.0111.0494.0147.0
PFM
ACGT
010.3110.0890.4770.124
020.2390.0560.5930.112
030.2260.0740.6530.047
040.2950.0960.5210.088
050.3120.0790.5320.077
060.20.1070.6320.061
070.40.050.470.081
080.3040.0350.6210.04
090.0750.0130.8750.037
100.0280.2130.7270.032
110.7030.0890.0190.189
120.0270.0120.9230.038
130.1780.0420.6940.086
140.2510.0390.6730.037
150.240.0360.6450.079
160.3140.2140.410.063
170.4090.1350.3690.088
180.2770.0640.5580.101
190.240.1230.5310.106
200.3720.0870.4490.093
210.3940.1040.4150.088
220.30.0610.5080.131
230.2490.1110.4940.147
PWM
ACGT
010.216-1.0210.642-0.695
02-0.046-1.4740.86-0.796
03-0.101-1.2020.956-1.643
040.163-0.9470.732-1.033
050.219-1.1380.752-1.163
06-0.222-0.840.924-1.391
070.466-1.5830.627-1.114
080.193-1.9260.906-1.798
09-1.189-2.841.248-1.873
10-2.137-0.161.063-2.011
111.03-1.021-2.498-0.278
12-2.171-2.911.301-1.847
13-0.338-1.7511.017-1.055
140.003-1.8220.986-1.873
15-0.042-1.8990.944-1.138
160.226-0.1550.491-1.359
170.489-0.6110.386-1.033
180.101-1.3440.8-0.897
19-0.042-0.7030.751-0.85
200.394-1.0440.582-0.978
210.451-0.8680.503-1.033
220.18-1.3910.706-0.641
23-0.005-0.8040.677-0.527
Standard thresholds
P-value Threshold
0.001 4.08541
0.0005 5.00131
0.0001 6.93726