VEZF1.H12INVITRO.1.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	VEZF1.H12INVITRO.1.P.D
Gene (human)	VEZF1 (GeneCards)
Gene synonyms (human)	DB1, ZNF161
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	1
Quality	D

Motif length	23
Consensus	dRRvRRRRGSWGRRRvvRvdvdd
GC content	63.99%
Information content (bits; total / per base)	12.788 / 0.556
Data sources	ChIP-Seq
Aligned words	1001

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	3 (19)	0.779	0.817	0.603	0.671	0.87	0.922	3.918	4.624	20.509	61.745

rSNP benchmarking, ADASTRA	odds-ratio	-log-Fisher's P	Pearson r	Kendall tau
#	1.632	2.026	0.107	0.05

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	Multiple dispersed zinc fingers {2.3.4} (TFClass)
TF subfamily	MAZ-like {2.3.4.8} (TFClass)
TFClass ID	TFClass: 2.3.4.8.2
HGNC	HGNC:12949
MGI
EntrezGene (human)	GeneID:7716 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	VEZF1_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q14119 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	3 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	VEZF1.H12INVITRO.1.P.D.pcm
PWM	VEZF1.H12INVITRO.1.P.D.pwm
PFM	VEZF1.H12INVITRO.1.P.D.pfm
Alignment	VEZF1.H12INVITRO.1.P.D.words.tsv
Threshold to P-value map	VEZF1.H12INVITRO.1.P.D.thr
Motif in other formats
JASPAR format	VEZF1.H12INVITRO.1.P.D_jaspar_format.txt
MEME format	VEZF1.H12INVITRO.1.P.D_meme_format.meme
Transfac format	VEZF1.H12INVITRO.1.P.D_transfac_format.txt
Homer format	VEZF1.H12INVITRO.1.P.D_homer_format_0.001.txt VEZF1.H12INVITRO.1.P.D_homer_format_0.0005.txt VEZF1.H12INVITRO.1.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	311.0	89.0	477.0	124.0
02	239.0	56.0	594.0	112.0
03	226.0	74.0	654.0	47.0
04	295.0	96.0	522.0	88.0
05	312.0	79.0	533.0	77.0
06	200.0	107.0	633.0	61.0
07	400.0	50.0	470.0	81.0
08	304.0	35.0	622.0	40.0
09	75.0	13.0	876.0	37.0
10	28.0	213.0	728.0	32.0
11	704.0	89.0	19.0	189.0
12	27.0	12.0	924.0	38.0
13	178.0	42.0	695.0	86.0
14	251.0	39.0	674.0	37.0
15	240.0	36.0	646.0	79.0
16	314.0	214.0	410.0	63.0
17	409.0	135.0	369.0	88.0
18	277.0	64.0	559.0	101.0
19	240.0	123.0	532.0	106.0
20	372.0	87.0	449.0	93.0
21	394.0	104.0	415.0	88.0
22	300.0	61.0	509.0	131.0
23	249.0	111.0	494.0	147.0

PFM

	A	C	G	T
01	0.311	0.089	0.477	0.124
02	0.239	0.056	0.593	0.112
03	0.226	0.074	0.653	0.047
04	0.295	0.096	0.521	0.088
05	0.312	0.079	0.532	0.077
06	0.2	0.107	0.632	0.061
07	0.4	0.05	0.47	0.081
08	0.304	0.035	0.621	0.04
09	0.075	0.013	0.875	0.037
10	0.028	0.213	0.727	0.032
11	0.703	0.089	0.019	0.189
12	0.027	0.012	0.923	0.038
13	0.178	0.042	0.694	0.086
14	0.251	0.039	0.673	0.037
15	0.24	0.036	0.645	0.079
16	0.314	0.214	0.41	0.063
17	0.409	0.135	0.369	0.088
18	0.277	0.064	0.558	0.101
19	0.24	0.123	0.531	0.106
20	0.372	0.087	0.449	0.093
21	0.394	0.104	0.415	0.088
22	0.3	0.061	0.508	0.131
23	0.249	0.111	0.494	0.147

PWM

	A	C	G	T
01	0.216	-1.021	0.642	-0.695
02	-0.046	-1.474	0.86	-0.796
03	-0.101	-1.202	0.956	-1.643
04	0.163	-0.947	0.732	-1.033
05	0.219	-1.138	0.752	-1.163
06	-0.222	-0.84	0.924	-1.391
07	0.466	-1.583	0.627	-1.114
08	0.193	-1.926	0.906	-1.798
09	-1.189	-2.84	1.248	-1.873
10	-2.137	-0.16	1.063	-2.011
11	1.03	-1.021	-2.498	-0.278
12	-2.171	-2.91	1.301	-1.847
13	-0.338	-1.751	1.017	-1.055
14	0.003	-1.822	0.986	-1.873
15	-0.042	-1.899	0.944	-1.138
16	0.226	-0.155	0.491	-1.359
17	0.489	-0.611	0.386	-1.033
18	0.101	-1.344	0.8	-0.897
19	-0.042	-0.703	0.751	-0.85
20	0.394	-1.044	0.582	-0.978
21	0.451	-0.868	0.503	-1.033
22	0.18	-1.391	0.706	-0.641
23	-0.005	-0.804	0.677	-0.527

Standard thresholds

P-value	Threshold
0.001	4.08541
0.0005	5.00131
0.0001	6.93726