| Motif | VEZF1.H12INVITRO.0.P.D |
| Gene (human) | VEZF1 (GeneCards) |
| Gene synonyms (human) | DB1, ZNF161 |
| Gene (mouse) | |
| Gene synonyms (mouse) | |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | D |
| Motif | VEZF1.H12INVITRO.0.P.D |
| Gene (human) | VEZF1 (GeneCards) |
| Gene synonyms (human) | DB1, ZNF161 |
| Gene (mouse) | |
| Gene synonyms (mouse) | |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | D |
| Motif length | 11 |
| Consensus | RRGGGhGGGGS |
| GC content | 86.21% |
| Information content (bits; total / per base) | 14.534 / 1.321 |
| Data sources | ChIP-Seq |
| Aligned words | 999 |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Human | 3 (19) | 0.806 | 0.86 | 0.617 | 0.745 | 0.852 | 0.907 | 2.807 | 3.179 | 76.886 | 142.31 |
| rSNP benchmarking, ADASTRA | odds-ratio | -log-Fisher's P | Pearson r | Kendall tau |
|---|---|---|---|---|
| # | 1.633 | 1.936 | 0.082 | 0.054 |
| TF superclass | Zinc-coordinating DNA-binding domains {2} (TFClass) |
| TF class | C2H2 zinc finger factors {2.3} (TFClass) |
| TF family | Multiple dispersed zinc fingers {2.3.4} (TFClass) |
| TF subfamily | MAZ-like {2.3.4.8} (TFClass) |
| TFClass ID | TFClass: 2.3.4.8.2 |
| HGNC | HGNC:12949 |
| MGI | |
| EntrezGene (human) | GeneID:7716 (SSTAR profile) |
| EntrezGene (mouse) | |
| UniProt ID (human) | VEZF1_HUMAN |
| UniProt ID (mouse) | |
| UniProt AC (human) | Q14119 (TFClass) |
| UniProt AC (mouse) | |
| GRECO-DB-TF | yes |
| ChIP-Seq | 3 human, 0 mouse |
| HT-SELEX | 0 |
| Methyl-HT-SELEX | 0 |
| PCM | VEZF1.H12INVITRO.0.P.D.pcm |
| PWM | VEZF1.H12INVITRO.0.P.D.pwm |
| PFM | VEZF1.H12INVITRO.0.P.D.pfm |
| Alignment | VEZF1.H12INVITRO.0.P.D.words.tsv |
| Threshold to P-value map | VEZF1.H12INVITRO.0.P.D.thr |
| Motif in other formats | |
| JASPAR format | VEZF1.H12INVITRO.0.P.D_jaspar_format.txt |
| MEME format | VEZF1.H12INVITRO.0.P.D_meme_format.meme |
| Transfac format | VEZF1.H12INVITRO.0.P.D_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 164.0 | 52.0 | 718.0 | 65.0 |
| 02 | 174.0 | 58.0 | 757.0 | 10.0 |
| 03 | 241.0 | 4.0 | 746.0 | 8.0 |
| 04 | 9.0 | 2.0 | 984.0 | 4.0 |
| 05 | 23.0 | 0.0 | 974.0 | 2.0 |
| 06 | 447.0 | 447.0 | 11.0 | 94.0 |
| 07 | 5.0 | 1.0 | 977.0 | 16.0 |
| 08 | 5.0 | 3.0 | 978.0 | 13.0 |
| 09 | 70.0 | 1.0 | 923.0 | 5.0 |
| 10 | 23.0 | 2.0 | 968.0 | 6.0 |
| 11 | 96.0 | 371.0 | 497.0 | 35.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.164 | 0.052 | 0.719 | 0.065 |
| 02 | 0.174 | 0.058 | 0.758 | 0.01 |
| 03 | 0.241 | 0.004 | 0.747 | 0.008 |
| 04 | 0.009 | 0.002 | 0.985 | 0.004 |
| 05 | 0.023 | 0.0 | 0.975 | 0.002 |
| 06 | 0.447 | 0.447 | 0.011 | 0.094 |
| 07 | 0.005 | 0.001 | 0.978 | 0.016 |
| 08 | 0.005 | 0.003 | 0.979 | 0.013 |
| 09 | 0.07 | 0.001 | 0.924 | 0.005 |
| 10 | 0.023 | 0.002 | 0.969 | 0.006 |
| 11 | 0.096 | 0.371 | 0.497 | 0.035 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.417 | -1.543 | 1.052 | -1.327 |
| 02 | -0.358 | -1.438 | 1.104 | -3.065 |
| 03 | -0.035 | -3.782 | 1.09 | -3.252 |
| 04 | -3.155 | -4.212 | 1.366 | -3.782 |
| 05 | -2.319 | -4.981 | 1.356 | -4.212 |
| 06 | 0.579 | 0.579 | -2.984 | -0.966 |
| 07 | -3.621 | -4.524 | 1.359 | -2.652 |
| 08 | -3.621 | -3.974 | 1.36 | -2.838 |
| 09 | -1.254 | -4.524 | 1.302 | -3.621 |
| 10 | -2.319 | -4.212 | 1.35 | -3.483 |
| 11 | -0.945 | 0.393 | 0.685 | -1.924 |
| P-value | Threshold |
|---|---|
| 0.001 | 2.751805 |
| 0.0005 | 4.02438 |
| 0.0001 | 6.60915 |