VEZF1.H12CORE.0.P.C motif - HOmo sapiens COmprehensive MOdel COllection

Motif	VEZF1.H12CORE.0.P.C
Gene (human)	VEZF1 (GeneCards)
Gene synonyms (human)	DB1, ZNF161
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	C

Motif length	11
Consensus	RRGGGhGGGGS
GC content	86.21%
Information content (bits; total / per base)	14.534 / 1.321
Data sources	ChIP-Seq
Aligned words	999

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	3 (19)	0.806	0.86	0.617	0.745	0.852	0.907	2.807	3.179	76.886	142.31

rSNP benchmarking, ADASTRA	odds-ratio	-log-Fisher's P	Pearson r	Kendall tau
#	1.633	1.936	0.082	0.054

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	Multiple dispersed zinc fingers {2.3.4} (TFClass)
TF subfamily	MAZ-like {2.3.4.8} (TFClass)
TFClass ID	TFClass: 2.3.4.8.2
HGNC	HGNC:12949
MGI
EntrezGene (human)	GeneID:7716 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	VEZF1_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q14119 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	3 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	VEZF1.H12CORE.0.P.C.pcm
PWM	VEZF1.H12CORE.0.P.C.pwm
PFM	VEZF1.H12CORE.0.P.C.pfm
Alignment	VEZF1.H12CORE.0.P.C.words.tsv
Threshold to P-value map	VEZF1.H12CORE.0.P.C.thr
Motif in other formats
JASPAR format	VEZF1.H12CORE.0.P.C_jaspar_format.txt
MEME format	VEZF1.H12CORE.0.P.C_meme_format.meme
Transfac format	VEZF1.H12CORE.0.P.C_transfac_format.txt
Homer format	VEZF1.H12CORE.0.P.C_homer_format_0.001.txt VEZF1.H12CORE.0.P.C_homer_format_0.0005.txt VEZF1.H12CORE.0.P.C_homer_format_0.0001.txt

PCM

	A	C	G	T
01	164.0	52.0	718.0	65.0
02	174.0	58.0	757.0	10.0
03	241.0	4.0	746.0	8.0
04	9.0	2.0	984.0	4.0
05	23.0	0.0	974.0	2.0
06	447.0	447.0	11.0	94.0
07	5.0	1.0	977.0	16.0
08	5.0	3.0	978.0	13.0
09	70.0	1.0	923.0	5.0
10	23.0	2.0	968.0	6.0
11	96.0	371.0	497.0	35.0

PFM

	A	C	G	T
01	0.164	0.052	0.719	0.065
02	0.174	0.058	0.758	0.01
03	0.241	0.004	0.747	0.008
04	0.009	0.002	0.985	0.004
05	0.023	0.0	0.975	0.002
06	0.447	0.447	0.011	0.094
07	0.005	0.001	0.978	0.016
08	0.005	0.003	0.979	0.013
09	0.07	0.001	0.924	0.005
10	0.023	0.002	0.969	0.006
11	0.096	0.371	0.497	0.035

PWM

	A	C	G	T
01	-0.417	-1.543	1.052	-1.327
02	-0.358	-1.438	1.104	-3.065
03	-0.035	-3.782	1.09	-3.252
04	-3.155	-4.212	1.366	-3.782
05	-2.319	-4.981	1.356	-4.212
06	0.579	0.579	-2.984	-0.966
07	-3.621	-4.524	1.359	-2.652
08	-3.621	-3.974	1.36	-2.838
09	-1.254	-4.524	1.302	-3.621
10	-2.319	-4.212	1.35	-3.483
11	-0.945	0.393	0.685	-1.924

Standard thresholds

P-value	Threshold
0.001	2.751805
0.0005	4.02438
0.0001	6.60915