MotifVAX1.H12INVIVO.0.SM.D
Gene (human)VAX1
(GeneCards)
Gene synonyms (human)
Gene (mouse)Vax1
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
D
Motif length12
ConsensusnvYMATTAvbnn
GC content38.12%
Information content (bits; total / per base)10.119 / 0.843
Data sourcesHT-SELEX + Methyl-HT-SELEX
Aligned words9974

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 4 experiments median 0.978 0.964 0.963 0.943 0.919 0.896
best 0.996 0.993 0.988 0.983 0.949 0.94
Methyl HT-SELEX, 1 experiments median 0.956 0.926 0.938 0.903 0.906 0.867
best 0.956 0.926 0.938 0.903 0.906 0.867
Non-Methyl HT-SELEX, 3 experiments median 0.991 0.986 0.979 0.97 0.927 0.914
best 0.996 0.993 0.988 0.983 0.949 0.94

rSNP benchmarking, SNP-SELEX auROC auPRC Pearson r Kendall tau
batch 2 0.799 0.673 0.806 0.613
TF superclassHelix-turn-helix domains {3} (TFClass)
TF classHomeo domain factors {3.1} (TFClass)
TF familyNK-related {3.1.2} (TFClass)
TF subfamilyVAX {3.1.2.22} (TFClass)
TFClass IDTFClass: 3.1.2.22.1
HGNCHGNC:12660
MGIMGI:1277163
EntrezGene (human)GeneID:11023
(SSTAR profile)
EntrezGene (mouse)GeneID:22326
(SSTAR profile)
UniProt ID (human)VAX1_HUMAN
UniProt ID (mouse)VAX1_MOUSE
UniProt AC (human)Q5SQQ9
(TFClass)
UniProt AC (mouse)Q2NKI2
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 0 mouse
HT-SELEX 3
Methyl-HT-SELEX 1
PCM
ACGT
012193.753160.752880.751738.75
021718.53348.53550.51356.5
03370.02524.0211.06869.0
044453.04906.0471.0144.0
059907.029.038.00.0
060.02.00.09972.0
070.019.02.09953.0
089873.01.063.037.0
093261.01792.04634.0287.0
10663.04214.02642.02455.0
111648.02521.03592.02213.0
122433.752789.752237.752512.75
PFM
ACGT
010.220.3170.2890.174
020.1720.3360.3560.136
030.0370.2530.0210.689
040.4460.4920.0470.014
050.9930.0030.0040.0
060.00.00.01.0
070.00.0020.00.998
080.990.00.0060.004
090.3270.180.4650.029
100.0660.4220.2650.246
110.1650.2530.360.222
120.2440.280.2240.252
PWM
ACGT
01-0.1280.2370.144-0.36
02-0.3720.2950.353-0.608
03-1.9030.012-2.461.013
040.5790.676-1.663-2.837
051.379-4.379-4.126-6.989
06-6.989-6.363-6.9891.385
07-6.989-4.764-6.3631.383
081.375-6.628-3.643-4.151
090.268-0.330.619-2.155
10-1.3220.5240.058-0.016
11-0.4140.0110.365-0.119
12-0.0240.112-0.1080.008
Standard thresholds
P-value Threshold
0.001 4.82431
0.0005 6.08096
0.0001 7.72564