UBIP1.H12RSNP.0.SM.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	UBIP1.H12RSNP.0.SM.D
Gene (human)	UBP1 (GeneCards)
Gene synonyms (human)	LBP1
Gene (mouse)	Ubp1
Gene synonyms (mouse)	Cp2b, Nf2d9
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	21
Consensus	ndRACCGGWYhvRWCYRGhhn
GC content	51.92%
Information content (bits; total / per base)	15.103 / 0.719
Data sources	HT-SELEX + Methyl-HT-SELEX
Aligned words	9804

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
Overall, 4 experiments	median	0.998	0.996	0.993	0.99	0.979	0.972
Overall, 4 experiments	best	0.999	0.998	0.997	0.995	0.991	0.988
Methyl HT-SELEX, 2 experiments	median	0.998	0.997	0.994	0.991	0.979	0.973
Methyl HT-SELEX, 2 experiments	best	0.999	0.998	0.997	0.995	0.991	0.988
Non-Methyl HT-SELEX, 2 experiments	median	0.997	0.995	0.993	0.99	0.979	0.972
Non-Methyl HT-SELEX, 2 experiments	best	0.998	0.997	0.994	0.992	0.982	0.975

TF superclass	Immunoglobulin fold {6} (TFClass)
TF class	Grainyhead domain factors {6.7} (TFClass)
TF family	CP2-related {6.7.2} (TFClass)
TF subfamily	{6.7.2.0} (TFClass)
TFClass ID	TFClass: 6.7.2.0.3
HGNC	HGNC:12507
MGI	MGI:104889
EntrezGene (human)	GeneID:7342 (SSTAR profile)
EntrezGene (mouse)	GeneID:22221 (SSTAR profile)
UniProt ID (human)	UBIP1_HUMAN
UniProt ID (mouse)	UBIP1_MOUSE
UniProt AC (human)	Q9NZI7 (TFClass)
UniProt AC (mouse)	Q811S7 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	0 human, 0 mouse
HT-SELEX	2
Methyl-HT-SELEX	2

PCM	UBIP1.H12RSNP.0.SM.D.pcm
PWM	UBIP1.H12RSNP.0.SM.D.pwm
PFM	UBIP1.H12RSNP.0.SM.D.pfm
Alignment	UBIP1.H12RSNP.0.SM.D.words.tsv
Threshold to P-value map	UBIP1.H12RSNP.0.SM.D.thr
Motif in other formats
JASPAR format	UBIP1.H12RSNP.0.SM.D_jaspar_format.txt
MEME format	UBIP1.H12RSNP.0.SM.D_meme_format.meme
Transfac format	UBIP1.H12RSNP.0.SM.D_transfac_format.txt
Homer format	UBIP1.H12RSNP.0.SM.D_homer_format_0.001.txt UBIP1.H12RSNP.0.SM.D_homer_format_0.0005.txt UBIP1.H12RSNP.0.SM.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	1710.0	2231.0	3520.0	2343.0
02	3801.5	1480.5	2830.5	1691.5
03	6876.0	329.0	1315.0	1284.0
04	7846.0	2.0	249.0	1707.0
05	0.0	9774.0	28.0	2.0
06	43.0	7973.0	4.0	1784.0
07	2479.0	23.0	7264.0	38.0
08	22.0	349.0	9432.0	1.0
09	2864.0	1355.0	23.0	5562.0
10	1634.0	1669.0	442.0	6059.0
11	1738.0	3327.0	1316.0	3423.0
12	3747.0	1697.0	2685.0	1675.0
13	6146.0	636.0	1688.0	1334.0
14	5838.0	257.0	1746.0	1963.0
15	34.0	9145.0	459.0	166.0
16	609.0	6225.0	206.0	2764.0
17	3270.0	261.0	5625.0	648.0
18	301.0	944.0	8527.0	32.0
19	3151.0	2968.0	287.0	3398.0
20	2129.25	2506.25	961.25	4207.25
21	2280.5	2970.5	2165.5	2387.5

PFM

	A	C	G	T
01	0.174	0.228	0.359	0.239
02	0.388	0.151	0.289	0.173
03	0.701	0.034	0.134	0.131
04	0.8	0.0	0.025	0.174
05	0.0	0.997	0.003	0.0
06	0.004	0.813	0.0	0.182
07	0.253	0.002	0.741	0.004
08	0.002	0.036	0.962	0.0
09	0.292	0.138	0.002	0.567
10	0.167	0.17	0.045	0.618
11	0.177	0.339	0.134	0.349
12	0.382	0.173	0.274	0.171
13	0.627	0.065	0.172	0.136
14	0.595	0.026	0.178	0.2
15	0.003	0.933	0.047	0.017
16	0.062	0.635	0.021	0.282
17	0.334	0.027	0.574	0.066
18	0.031	0.096	0.87	0.003
19	0.321	0.303	0.029	0.347
20	0.217	0.256	0.098	0.429
21	0.233	0.303	0.221	0.244

PWM

	A	C	G	T
01	-0.36	-0.094	0.362	-0.045
02	0.439	-0.504	0.144	-0.37
03	1.031	-2.002	-0.622	-0.646
04	1.163	-6.347	-2.279	-0.361
05	-6.973	1.383	-4.394	-6.347
06	-3.992	1.179	-5.965	-0.317
07	0.011	-4.574	1.086	-4.109
08	-4.615	-1.944	1.347	-6.612
09	0.156	-0.592	-4.574	0.819
10	-0.405	-0.384	-1.709	0.904
11	-0.343	0.305	-0.621	0.334
12	0.424	-0.367	0.091	-0.38
13	0.919	-1.346	-0.373	-0.608
14	0.867	-2.247	-0.339	-0.222
15	-4.213	1.316	-1.671	-2.679
16	-1.39	0.932	-2.466	0.12
17	0.288	-2.232	0.83	-1.328
18	-2.09	-0.953	1.246	-4.27
19	0.251	0.191	-2.138	0.326
20	-0.141	0.022	-0.935	0.54
21	-0.072	0.192	-0.124	-0.026

Standard thresholds

P-value	Threshold
0.001	2.59091
0.0005	3.89816
0.0001	6.53696