MotifUBIP1.H12INVITRO.0.SM.B
Gene (human)UBP1
(GeneCards)
Gene synonyms (human)LBP1
Gene (mouse)Ubp1
Gene synonyms (mouse)Cp2b, Nf2d9
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
B
Motif length21
ConsensusndRACCGGWYhvRWCYRGhhn
GC content51.92%
Information content (bits; total / per base)15.103 / 0.719
Data sourcesHT-SELEX + Methyl-HT-SELEX
Aligned words9804

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 4 experiments median 0.998 0.996 0.993 0.99 0.979 0.972
best 0.999 0.998 0.997 0.995 0.991 0.988
Methyl HT-SELEX, 2 experiments median 0.998 0.997 0.994 0.991 0.979 0.973
best 0.999 0.998 0.997 0.995 0.991 0.988
Non-Methyl HT-SELEX, 2 experiments median 0.997 0.995 0.993 0.99 0.979 0.972
best 0.998 0.997 0.994 0.992 0.982 0.975
TF superclassImmunoglobulin fold {6} (TFClass)
TF classGrainyhead domain factors {6.7} (TFClass)
TF familyCP2-related {6.7.2} (TFClass)
TF subfamily {6.7.2.0} (TFClass)
TFClass IDTFClass: 6.7.2.0.3
HGNCHGNC:12507
MGIMGI:104889
EntrezGene (human)GeneID:7342
(SSTAR profile)
EntrezGene (mouse)GeneID:22221
(SSTAR profile)
UniProt ID (human)UBIP1_HUMAN
UniProt ID (mouse)UBIP1_MOUSE
UniProt AC (human)Q9NZI7
(TFClass)
UniProt AC (mouse)Q811S7
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 0 mouse
HT-SELEX 2
Methyl-HT-SELEX 2
PCM
ACGT
011710.02231.03520.02343.0
023801.51480.52830.51691.5
036876.0329.01315.01284.0
047846.02.0249.01707.0
050.09774.028.02.0
0643.07973.04.01784.0
072479.023.07264.038.0
0822.0349.09432.01.0
092864.01355.023.05562.0
101634.01669.0442.06059.0
111738.03327.01316.03423.0
123747.01697.02685.01675.0
136146.0636.01688.01334.0
145838.0257.01746.01963.0
1534.09145.0459.0166.0
16609.06225.0206.02764.0
173270.0261.05625.0648.0
18301.0944.08527.032.0
193151.02968.0287.03398.0
202129.252506.25961.254207.25
212280.52970.52165.52387.5
PFM
ACGT
010.1740.2280.3590.239
020.3880.1510.2890.173
030.7010.0340.1340.131
040.80.00.0250.174
050.00.9970.0030.0
060.0040.8130.00.182
070.2530.0020.7410.004
080.0020.0360.9620.0
090.2920.1380.0020.567
100.1670.170.0450.618
110.1770.3390.1340.349
120.3820.1730.2740.171
130.6270.0650.1720.136
140.5950.0260.1780.2
150.0030.9330.0470.017
160.0620.6350.0210.282
170.3340.0270.5740.066
180.0310.0960.870.003
190.3210.3030.0290.347
200.2170.2560.0980.429
210.2330.3030.2210.244
PWM
ACGT
01-0.36-0.0940.362-0.045
020.439-0.5040.144-0.37
031.031-2.002-0.622-0.646
041.163-6.347-2.279-0.361
05-6.9731.383-4.394-6.347
06-3.9921.179-5.965-0.317
070.011-4.5741.086-4.109
08-4.615-1.9441.347-6.612
090.156-0.592-4.5740.819
10-0.405-0.384-1.7090.904
11-0.3430.305-0.6210.334
120.424-0.3670.091-0.38
130.919-1.346-0.373-0.608
140.867-2.247-0.339-0.222
15-4.2131.316-1.671-2.679
16-1.390.932-2.4660.12
170.288-2.2320.83-1.328
18-2.09-0.9531.246-4.27
190.2510.191-2.1380.326
20-0.1410.022-0.9350.54
21-0.0720.192-0.124-0.026
Standard thresholds
P-value Threshold
0.001 2.59091
0.0005 3.89816
0.0001 6.53696