TZAP.H12INVITRO.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	TZAP.H12INVITRO.0.P.D
Gene (human)	ZBTB48 (GeneCards)
Gene synonyms (human)	HKR3, TZAP, ZNF855
Gene (mouse)	Zbtb48
Gene synonyms (mouse)	Hkr3, Tzap
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	14
Consensus	hbhhRvTCCCTdRv
GC content	57.38%
Information content (bits; total / per base)	11.203 / 0.8
Data sources	ChIP-Seq
Aligned words	1001

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	5 (30)	0.811	0.909	0.663	0.818	0.787	0.83	2.569	2.703	21.195	260.602

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.102
HGNC	HGNC:4930
MGI	MGI:2140248
EntrezGene (human)	GeneID:3104 (SSTAR profile)
EntrezGene (mouse)	GeneID:100090 (SSTAR profile)
UniProt ID (human)	TZAP_HUMAN
UniProt ID (mouse)	TZAP_MOUSE
UniProt AC (human)	P10074 (TFClass)
UniProt AC (mouse)	Q1H9T6 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	5 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	TZAP.H12INVITRO.0.P.D.pcm
PWM	TZAP.H12INVITRO.0.P.D.pwm
PFM	TZAP.H12INVITRO.0.P.D.pfm
Alignment	TZAP.H12INVITRO.0.P.D.words.tsv
Threshold to P-value map	TZAP.H12INVITRO.0.P.D.thr
Motif in other formats
JASPAR format	TZAP.H12INVITRO.0.P.D_jaspar_format.txt
MEME format	TZAP.H12INVITRO.0.P.D_meme_format.meme
Transfac format	TZAP.H12INVITRO.0.P.D_transfac_format.txt
Homer format	TZAP.H12INVITRO.0.P.D_homer_format_0.001.txt TZAP.H12INVITRO.0.P.D_homer_format_0.0005.txt TZAP.H12INVITRO.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	336.0	327.0	132.0	206.0
02	121.0	356.0	351.0	173.0
03	486.0	285.0	89.0	141.0
04	179.0	412.0	143.0	267.0
05	236.0	36.0	621.0	108.0
06	253.0	204.0	473.0	71.0
07	21.0	139.0	29.0	812.0
08	1.0	983.0	12.0	5.0
09	0.0	992.0	1.0	8.0
10	0.0	1000.0	0.0	1.0
11	9.0	12.0	0.0	980.0
12	369.0	24.0	313.0	295.0
13	529.0	60.0	398.0	14.0
14	261.0	263.0	386.0	91.0

PFM

	A	C	G	T
01	0.336	0.327	0.132	0.206
02	0.121	0.356	0.351	0.173
03	0.486	0.285	0.089	0.141
04	0.179	0.412	0.143	0.267
05	0.236	0.036	0.62	0.108
06	0.253	0.204	0.473	0.071
07	0.021	0.139	0.029	0.811
08	0.001	0.982	0.012	0.005
09	0.0	0.991	0.001	0.008
10	0.0	0.999	0.0	0.001
11	0.009	0.012	0.0	0.979
12	0.369	0.024	0.313	0.295
13	0.528	0.06	0.398	0.014
14	0.261	0.263	0.386	0.091

PWM

	A	C	G	T
01	0.293	0.266	-0.634	-0.193
02	-0.719	0.35	0.336	-0.366
03	0.66	0.129	-1.021	-0.568
04	-0.332	0.496	-0.554	0.064
05	-0.058	-1.899	0.905	-0.831
06	0.011	-0.203	0.633	-1.243
07	-2.406	-0.583	-2.104	1.172
08	-4.526	1.363	-2.91	-3.623
09	-4.983	1.372	-4.526	-3.254
10	-4.983	1.38	-4.983	-4.526
11	-3.157	-2.91	-4.983	1.36
12	0.386	-2.282	0.222	0.163
13	0.745	-1.407	0.461	-2.774
14	0.042	0.049	0.431	-1.0

Standard thresholds

P-value	Threshold
0.001	4.34406
0.0005	5.45761
0.0001	7.54831