MotifTWST2.H12INVIVO.0.P.B
Gene (human)TWIST2
(GeneCards)
Gene synonyms (human)BHLHA39, DERMO1
Gene (mouse)Twist2
Gene synonyms (mouse)Dermo1
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
B
Motif length19
ConsensusSdbvYKbnnnSCAGMTGKb
GC content56.08%
Information content (bits; total / per base)13.646 / 0.718
Data sourcesChIP-Seq
Aligned words995

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Mouse 2 (13) 0.949 0.965 0.901 0.925 0.918 0.948 4.158 4.788 326.854 417.046
TF superclassBasic domains {1} (TFClass)
TF classBasic helix-loop-helix factors (bHLH) {1.2} (TFClass)
TF familyTal-related {1.2.3} (TFClass)
TF subfamilyTWIST {1.2.3.2} (TFClass)
TFClass IDTFClass: 1.2.3.2.2
HGNCHGNC:20670
MGIMGI:104685
EntrezGene (human)GeneID:117581
(SSTAR profile)
EntrezGene (mouse)GeneID:13345
(SSTAR profile)
UniProt ID (human)TWST2_HUMAN
UniProt ID (mouse)TWST2_MOUSE
UniProt AC (human)Q8WVJ9
(TFClass)
UniProt AC (mouse)Q9D030
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 2 mouse
HT-SELEX 0
Methyl-HT-SELEX 0
PCM
ACGT
01126.0625.0143.0101.0
02550.088.0152.0205.0
03152.0207.0430.0206.0
04382.0412.0161.040.0
0599.0153.070.0673.0
0670.096.0669.0160.0
07129.0200.0521.0145.0
08176.0309.0295.0215.0
09278.0268.0219.0230.0
10333.0156.0256.0250.0
11198.0574.0222.01.0
124.0989.00.02.0
13975.01.03.016.0
141.0128.0797.069.0
15602.0377.012.04.0
168.04.00.0983.0
170.04.0988.03.0
1823.0136.0300.0536.0
1992.0222.0415.0266.0
PFM
ACGT
010.1270.6280.1440.102
020.5530.0880.1530.206
030.1530.2080.4320.207
040.3840.4140.1620.04
050.0990.1540.070.676
060.070.0960.6720.161
070.130.2010.5240.146
080.1770.3110.2960.216
090.2790.2690.220.231
100.3350.1570.2570.251
110.1990.5770.2230.001
120.0040.9940.00.002
130.980.0010.0030.016
140.0010.1290.8010.069
150.6050.3790.0120.004
160.0080.0040.00.988
170.00.0040.9930.003
180.0230.1370.3020.539
190.0920.2230.4170.267
PWM
ACGT
01-0.6730.917-0.549-0.891
020.79-1.027-0.488-0.192
03-0.488-0.1820.544-0.187
040.4270.502-0.431-1.792
05-0.911-0.482-1.2510.991
06-1.251-0.9410.985-0.437
07-0.65-0.2160.736-0.535
08-0.3430.2160.169-0.145
090.110.074-0.126-0.078
100.29-0.4630.0290.005
11-0.2260.832-0.113-4.521
12-3.7781.375-4.978-4.208
131.361-4.521-3.97-2.648
14-4.521-0.6581.16-1.265
150.880.413-2.904-3.778
16-3.249-3.778-4.9781.369
17-4.978-3.7781.374-3.97
18-2.316-0.5980.1860.764
19-0.983-0.1130.5090.067
Standard thresholds
P-value Threshold
0.001 3.34151
0.0005 4.56711
0.0001 7.04406